Published 2017 | Version v1
Dataset Open

Coxiella_burnetii_ wtACCMD_pH4d5

  • 1. ROR icon California Institute of Technology

Description

Coxiella burnetii Nine Mile phase II clone 4 (NMIIC4) strain. Wild-type cells day-5 culture. Cells grown in acidic media ACCMD and pH 4.75

Technical info

Tilt Series Date: 2017-08-15

Data Taken By: Debnath Ghosal

Species / Specimen: Coxiella burnetii

Strain: Nine Mile phase II clone 4

Tilt Series Settings: Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Ų, defocus: -7.0 μm, magnification: 27500x.

Microscope: Caltech Polara

Acquisition Software: UCSFTomo

Upload Method: pipeline

Processing Software Used: Raptor

Collaborators and Roles: Strain sent to us by Robert Heinzen. Data collected and processed by Debnath Ghosal using Caltech tomography pipeline.

Purification / Growth Conditions / Treatment: Cells were grown in Robert Heinzen's lab @NIAID and ~50 ul cells were sent to us.

Sample Preparation: Refer to Heinzen lab. Freezing: 100% humidity, 4µl sample, Blot force 6, blot time 4 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.

Attached Files

Cb_20170816_Cb1pH4d50048.mrc, Tilt Series (Pixel Size 0.39 nm), 1.7 GB

Cb_20170816_Cb1pH4d50048_full.rec, Reconstruction (Pixel Size 1.56 nm), 445.4 MB

Files

keyimg_dga2017-08-15-49.jpg

Files (2.2 GB)

Name Size
1.7 GB (external) Download
445.4 MB (external) Download
md5:04470c079b8312f2d1059edb33df8d56
1.1 MB Preview Download
md5:736509f4c2eba143f2a54fa966b7e06d
15.4 MB Preview Download

Additional details

Identifiers

DOI
10.22002/12496-vxg91
TILT_SERIES_ID
dga2017-08-15-49

Funding

NIH
HHMI
Beckman Institute
Gordon and Betty Moore Foundation
Agouron Institute
John Templeton Foundation

Dates

Collected
2017-08-15
Created
2017-08-18
Updated
2017-09-07