CeNGEN (Taylor et al 2021) scRNAseq dataset wrangled into standard WormBase anndata
100k C. elegans cells FACS sorted to enrich for neurons - 70k cells are neurons, 30k are other types
For more information about the data see the CeNGEN project website:
Preprint describing data and analysises:
Molecular topography of an entire nervous system - bioRxiv 2020
Seth R Taylor, Gabriel Santpere, Alexis Weinreb, Alec Barrett, Molly B. Reilly, Chuan Xu, Erdem Varol, Panos Oikonomou, Lori Glenwinkel, Rebecca McWhirter, Abigail Poff, Manasa Basavaraju, Ibnul Rafi, Eviatar Yemini, Steven J Cook, Alexander Abrams, Berta Vidal, Cyril Cros, Saeed Tavazoie, Nenad Sestan, Marc Hammarlund, View ORCID ProfileOliver Hobert, David M. Miller III
The file `cengen_author_provided_matrices.zip` contains the original mtx files provided by the authors as outputted by CellRanger, both filtered and unfiltered.
The file `taylor2020.h5ad` contains those matrices and the metadata from the 2020 cengen data release wrangled into the WormBase standard format, which is described at: