Published May 26, 2021 | Version 1.0
Dataset Open

CeNGEN scRNAseq dataset wrangled into standard WormBase anndata - 100k C. elegans cells FACS sorted for neurons in L4 larvae

  • 1. ROR icon California Institute of Technology

Description

CeNGEN (Taylor et al 2021) scRNAseq dataset wrangled into standard WormBase anndata 100k C. elegans cells FACS sorted to enrich for neurons - 70k cells are neurons, 30k are other types For more information about the data see the CeNGEN project website: https://cengen.org Preprint describing data and analysises: https://doi.org/10.1101/2020.12.15.422897 Molecular topography of an entire nervous system - bioRxiv 2020 Seth R Taylor, Gabriel Santpere, Alexis Weinreb, Alec Barrett, Molly B. Reilly, Chuan Xu, Erdem Varol, Panos Oikonomou, Lori Glenwinkel, Rebecca McWhirter, Abigail Poff, Manasa Basavaraju, Ibnul Rafi, Eviatar Yemini, Steven J Cook, Alexander Abrams, Berta Vidal, Cyril Cros, Saeed Tavazoie, Nenad Sestan, Marc Hammarlund, View ORCID ProfileOliver Hobert, David M. Miller III The file `cengen_author_provided_matrices.zip` contains the original mtx files provided by the authors as outputted by CellRanger, both filtered and unfiltered. The file `taylor2020.h5ad` contains those matrices and the metadata from the 2020 cengen data release wrangled into the WormBase standard format, which is described at: https://github.com/WormBase/anndata-wrangling/

Files

GSE136049_cell_annotations (1).csv
Files (2.6 GB)
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md5:ebff68a522432ec8b582293a7b6abb76
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md5:c25fda2c5f4f4dd96432dae1bad60d8c
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md5:f80fd68ae4158ad31cbe608851071148
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Additional details

Created:
September 8, 2022
Modified:
November 18, 2022