Published 2017 | Version v1
Dataset Open

Coxiella_ Verocells_28dpi

  • 1. ROR icon California Institute of Technology

Description

Coxiella burnetii Nine Mile phase II clone 4 (NMIIC4) strain. Coxiella cells purified from infected Vero cells.

Technical info

Tilt Series Date: 2017-09-25

Data Taken By: Debnath Ghosal

Species / Specimen: Coxiella burnetii

Strain: Nine Mile phase II clone 4

Tilt Series Settings: Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Ų, defocus: -7.0 μm, magnification: 27500x.

Microscope: Caltech Polara

Acquisition Software: UCSFTomo

Upload Method: pipeline

Processing Software Used: Raptor

Collaborators and Roles: Strain sent to us by Robert Heinzen. Data collected and processed by Debnath Ghosal using Caltech tomography pipeline.

Purification / Growth Conditions / Treatment: Refer to Heinzen lab.

Sample Preparation: Freezing: 100% humidity, 4µl sample, Blot force 6, blot time 4 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.T

dga2017-09-25-87_slicer19053.jpg: large flat strucutres on the outside of the cells

Attached Files

Cb_vero_201709250087.mrc, Tilt Series (Pixel Size 0.39 nm), 1.7 GB

Cb_vero_201709250087.rec, Reconstruction (Pixel Size 1.56 nm), 889.0 MB

Files

dga2017-09-25-87_slicer19053.jpg

Files (2.6 GB)

Name Size
1.7 GB (external) Download
889.0 MB (external) Download
md5:266fc7fd746e239a23dc1b871923892f
325.4 kB Preview Download
md5:83cb317541e978f9b09ce2f5449d7eb4
1.0 MB Preview Download
md5:8ba741924e21594ad36106f25cbe420d
18.1 MB Preview Download

Additional details

Identifiers

DOI
10.22002/1ma5x-dz813
TILT_SERIES_ID
dga2017-09-25-87

Funding

NIH
HHMI
Beckman Institute
Gordon and Betty Moore Foundation
Agouron Institute
John Templeton Foundation

Dates

Collected
2017-09-25
Created
2017-09-27
Updated
2017-11-18