Published 2010 | Version v1
Dataset Open

Sulfolobus solfataricus

Creators

  • 1. ROR icon California Institute of Technology

Description

STIV - infected Sulfolobus solfataricus, Sulfolobus turreted icosahedral virus, Taxonomy ID 269145, Sulfolobus solfataricus, thermophile, pyramid, intrapyramidal body, virus infection

Technical info

<strong>Tilt Series Date:</strong> 2010-01-04</p>

<strong>Data Taken By:</strong> Lu Gan</p>

<strong>Species / Specimen:</strong> Sulfolobus solfataricus</p>

<strong>Strain:</strong> 2-1-12</p>

<strong>Tilt Series Settings:</strong> Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Ų, defocus: None μm, magnification: 18000x. </p>

<strong>Acquisition Software:</strong> Leginon</p>

<strong>Upload Method:</strong> pipeline</p>

<strong>Processing Software Used:</strong> Raptor</p>

<strong>Collaborators and Roles:</strong> Prepared sample: Chi-yu FuDesigned experiments: Chi-yu Fu, Kang Wang, Lu Gan, Jason Lanman, Reza Khayat, Mark J. Young, Grant J. Jensen, Peter C. Doerschuk, John E. JohnsonCollected data: Chi-yu Fu, Lu GanAnalyzed data: Chi-yu Fu, Kang Wang, Lu Gan, Jason Lanman, Reza Khayat, Mark J. Young, Grant J. Jensen, Peter C. Doerschuk, John E. Johnson</p>

<strong>Purification / Growth Conditions / Treatment:</strong> S. solfataricus strain 2-2-12 cultures were infected with STIV as previously described (Ortmann et al., 2006). Sulfolobus were grown up from glycerol stock in media 182 (pH 3.5), 80°C and passage once. The cultures were passed second time to media 182 (pH 2.5) and infected with STIV at MOI ~22 at OD 650 nm ~0.4. At 22–32 hr postinfection, cells were concentrated ~20 fold by centrifugation.</p>

<strong>Sample Preparation:</strong> Equal volume of cells were mixed with BSA-treated 10 nm gold colloidal beads and applied to plasma cleaned Quantifoil holey carbon films. The grids were plunge-frozen in liquid ethane using a Vitrobot (FEI Inc.) and stored in liquid nitrogen.</p>

External Files

Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2010-01-04-24/rawdata/</p>

26.mrc, Tilt Series (Pixel Size 1.26 nm), 1.0 GB

<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2010-01-04-24/rawdata/26.mrc" > <i class="download icon"></i> Download </a>

</p>

26_full.rec, Reconstruction (Pixel Size 2.52 nm), 629.1 MB

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</p>

Files

keyimg_lga2010-01-04-24.jpg

Files (23.0 MB)

Name Size
md5:4787e00882a2b17260cf90bc4230413e
1.2 MB Preview Download
md5:1606d90f27f1b3511f322805edf9262f
21.9 MB Preview Download

Additional details

Identifiers

DOI
10.22002/2f8ks-p0536
TILT_SERIES_ID
lga2010-01-04-24

Funding

NIH
HHMI
Beckman Institute
Gordon and Betty Moore Foundation
Agouron Institute
John Templeton Foundation

Dates

Collected
2010-01-04
Created
2013-01-08
Updated
2013-01-10