Published 2019 | Version v1
Dataset Open

Legionella KS79 (WT), 42 C_On

  • 1. ROR icon California Institute of Technology

Description

Legionella KS79 (WT),42 C_On (HS001 A)

Technical info

<strong>Tilt Series Date:</strong> 2019-05-28</p>

<strong>Data Taken By:</strong> Debnath Ghosal</p>

<strong>Species / Specimen:</strong> Legionella pneumophila</p>

<strong>Strain:</strong> Philadelphia-1_Lp02</p>

<strong>Tilt Series Settings:</strong> Single Axis, tilt range: (-51.0°, 51.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Ų, defocus: -6.0 μm, magnification: 42000x. </p>

<strong>Microscope:</strong> Janelia Titan</p>

<strong>Acquisition Software:</strong> UCSFTomo</p>

<strong>Upload Method:</strong> pipeline</p>

<strong>Processing Software Used:</strong> Raptor</p>

<strong>Collaborators and Roles:</strong> Strain sent to us by Howard Shuman (University of Chicago). Data collected by Debnath Ghosal and Yuxi Liu.</p>

<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 3 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>

External Files

Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-28-191/rawdata/</p>

HS001A-area2-tomo0016.mrc, Tilt Series (Pixel Size 0.26 nm), 996.7 MB

<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-28-191/rawdata/HS001A-area2-tomo0016.mrc" > <i class="download icon"></i> Download </a>

</p>

HS001A-area2-tomo0016_full.rec, Reconstruction (Pixel Size 1.04 nm), 445.4 MB

<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-28-191/3dimage_103951/HS001A-area2-tomo0016_full.rec" > <i class="download icon"></i> Download </a>

</p>

Files

keyimg_dga2019-05-28-191.jpg

Files (15.8 MB)

Name Size
md5:96040f2dcbee13c7b30d99e1d2d196dd
1.1 MB Preview Download
md5:f93a0433cd9101a2165e4f28d17c402f
14.7 MB Preview Download

Additional details

Identifiers

DOI
10.22002/2sx1z-h0g15
TILT_SERIES_ID
dga2019-05-28-191

Funding

NIH
HHMI
Beckman Institute
Gordon and Betty Moore Foundation
Agouron Institute
John Templeton Foundation

Dates

Collected
2019-05-28
Created
2019-06-04
Updated
2019-06-05