Published 2017 | Version v1
Dataset Open

H. pylori 26695 WT / AGS

Creators

  • 1. ROR icon California Institute of Technology

Description

Grid box YWC243

Technical info

Tilt Series Date: 2017-02-27

Data Taken By: Yi-Wei Chang

Species / Specimen: Helicobacter pylori

Strain: 26695

Tilt Series Settings: Single Axis, tilt range: (-60.0°, 60.0°), step: 2.0°, constant angular increment, dosage: 180.0 eV/Ų, defocus: -6.0 μm, magnification: 27500x.

Microscope: Caltech Polara

Acquisition Software: UCSFTomo

Upload Method: pipeline

Processing Software Used: Raptor

Collaborators and Roles: Strain and sample prepared by Carrie Shaffer

Sample Preparation: Vitrobot settings: 100% humidity, 37 C, 3µl BSA treated 10 nm gold (100 ml gold+ 25 ml 10% BSA x4, resuspend in 30 ul). Blot for 5 sec (1 sec longer than usual to remove more solution). Ethane/propane mix.

ycw2017-02-27-16_slicer17860.jpg: cag T4SS wi fi particle ycw2017-02-27-16_slicer17861.jpg: cag T4SS wi fi particle ycw2017-02-27-16_slicer17862.jpg: partially assembled cag T4SS wi fi particle? ycw2017-02-27-16_slicer17863.jpg: T4SS channel/tube? ycw2017-02-27-16_slicer17864.jpg: cag T4SS pilus/channel? . . cag T4SS (green)

Attached Files

20170227_YWC243_10015.mrc, Tilt Series (Pixel Size 0.39 nm), 1.7 GB

20170227_YWC243_10015_full.rec, Reconstruction (Pixel Size 1.56 nm), 534.5 MB

Files

keyimg_ycw2017-02-27-16.jpg

Files (2.3 GB)

Name Size
1.7 GB (external) Download
534.5 MB (external) Download
md5:009b7bd9b7a9dfcf8e2917e1a94371b3
1.1 MB Preview Download
md5:4079e404c2eddcd2989f7f9629aa7aef
19.2 MB Preview Download
md5:7f975bf5fc2468fc2506b17dd006c937
492.0 kB Preview Download
md5:38a9fb001705e8e6d208c8b109710f79
343.9 kB Preview Download
md5:19e83c6b643cb11433c1c4d2e58fbf84
370.9 kB Preview Download
md5:595c5f3c426ce6195fe282fb4f554cc5
364.9 kB Preview Download
md5:8a7805921728b90a89c0219b1d49ac1f
286.8 kB Preview Download

Additional details

Identifiers

DOI
10.22002/37tt4-qp748
TILT_SERIES_ID
ycw2017-02-27-16

Funding

NIH
HHMI
Beckman Institute
Gordon and Betty Moore Foundation
Agouron Institute
John Templeton Foundation

Dates

Collected
2017-02-27
Created
2017-02-27
Updated
2017-03-03