moccasin-1.2.0.zip
moccasin-1.2.0
.coveragerc
1.6 kB
.github
CONTRIBUTING.md
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.gitignore
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.gitmodules
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.travis.yml
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AUTHORS.md
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CONDUCT.md
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LICENSE.html
27.1 kB
LICENSE.txt
26.5 kB
NEWS.md
5.4 kB
README.md
17.0 kB
TODO.md
799 Bytes
bin
moccasin
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dev
file-headers
python.py
991 Bytes
git-scripts
README.md
1.5 kB
python.prepare-commit-msg
4.7 kB
misc-files
sourceforge-readme
README.md
723 Bytes
utilities
get-release-count.sh
91 Bytes
run-autopep.sh
1.2 kB
run-pep.sh
1.2 kB
docs
.gitignore
2 Bytes
README.md
467 Bytes
presentations
slides-for-prime-meeting-2015
moccasin-demo
antagonist-sbml.xml
9.1 kB
antagonist.m
1.4 kB
slides-for-prime.key
Data
pasted-image-251.jpg
148.5 kB
pasted-image-small-252.jpg
27.2 kB
st0-316.jpg
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st1-297.jpg
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Index.zip
68.5 kB
Metadata
BuildVersionHistory.plist
275 Bytes
DocumentIdentifier
36 Bytes
Properties.plist
340 Bytes
preview-micro.jpg
1.4 kB
preview-web.jpg
10.9 kB
preview.jpg
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slides-for-prime.pdf
239.9 kB
slides-for-prime.pptx
465.2 kB
project
README.md
499 Bytes
code-conventions.md
5.0 kB
examples
example.m
430 Bytes
example.xml
3.5 kB
screenshot-01.jpg
112.8 kB
logo
README.md
897 Bytes
moccasin_logo_20151002
1024_512.ai
4.0 MB
128.ai
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16_3.png
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256.ai
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32_1.ai
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32_2.ai
1.2 MB
64.ai
1.2 MB
logo.ai
3.7 MB
logo_1024.png
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logo_128.png
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logo_16_1.png
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logo_16_2.png
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logo_16_3.png
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logo_256.png
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logo_31_1.png
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logo_32_2.png
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logo_512.png
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logo_64.png
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readme.txt
442 Bytes
versioning-notes.md
599 Bytes
pubs
papers
bioinformatics-2016
.gitattributes
15 Bytes
first-submission
FormattedMOCCASINManuscript.docx
49.1 kB
FormattedMOCCASINManuscript.pdf
351.0 kB
FormattedMOCCASINManuscript.txt
14.2 kB
MOCCASIN_manuscript_submitted_revised.doc
65.5 kB
cover-letter.txt
605 Bytes
moccasin-submission-proof-from-oxfordjournals-system-2015-11-11.pdf
304.4 kB
response
LetterToReviewersFinalVersion edited merged final 2016-01-19.docx
25.8 kB
MOCCASIN_manuscript_revised 2016-01-18 MH.doc
68.1 kB
MOCCASIN_manuscript_revised 2016-01-19 final merged.doc
65.0 kB
letter-to-reviewers-text.txt
4.3 kB
moccasin-finalized-proof.pdf
398.5 kB
moccasin-paper-copyediting-proof.pdf
402.1 kB
quickstart.md
1.3 kB
moccasin
.gitignore
35 Bytes
README.md
5.1 kB
__init__.py
5.7 kB
__main__.py
1.1 kB
__version__.py
2.0 kB
converter
README.md
1.5 kB
__init__.py
1.3 kB
cleaner.py
5.2 kB
converter.py
62.6 kB
evaluate_formula.py
8.6 kB
expr_tester.py
2.0 kB
finder.py
8.3 kB
name_generator.py
2.3 kB
recognizer.py
4.5 kB
rewriter.py
7.8 kB
singleton.py
1.8 kB
xpp.py
2.3 kB
errors.py
2.0 kB
interfaces
README.md
2.6 kB
__init__.py
1.1 kB
controller.py
5.3 kB
moccasin_CLI.py
14.1 kB
moccasin_GUI.py
31.6 kB
network_utils.py
321 Bytes
printDialog.py
4.7 kB
matlab_parser
README.md
22.9 kB
__init__.py
1.1 kB
context.py
9.2 kB
functions.py
31.4 kB
grammar_formatter.py
13.1 kB
grammar_utils.py
4.4 kB
matlab.py
30.8 kB
parser.py
117.5 kB
test.py
4.8 kB
other
models
README.md
522 Bytes
distefano
README.md
343 Bytes
thysim_sbml.m
8.2 kB
thysim_sbml_orig.m
8.3 kB
handel
README.md
395 Bytes
resimmcode.m
8.8 kB
hayot
antagonist-modified.m
1.4 kB
antagonist.m
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antagonist.xml
7.7 kB
koenig
Koenig2014_Hepatic_Glucose_Model.xml
151.3 kB
Koenig2014_Hepatic_Glucose_Model_annotated.xml
203.3 kB
README.md
789 Bytes
core_kinetic_model
create_figures_from_paper.m
588 Bytes
dydt_model_glucose.m
36.4 kB
dydt_model_glucose_sbml.m
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fig_glucose_glycogen_dependency.m
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fig_glycogen_metabolism.m
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fig_short_term_fasting.m
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fig_single.m
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initial_concentrations.m
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install.m
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names_c.m
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names_v.m
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sim_glucose_dependency.m
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sim_glucose_glycogen_dependency.m
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sim_hormone_response.m
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sim_single.m
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tools
colormap_gwr.m
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compare_timecourses.m
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model_stoichiometry.m
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print_stoichiometry.m
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nudelman
README.md
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f.m
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sbmltoolbox
README.md
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case00001.m
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case00002.m
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case00004.m
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case00019.m
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case00029.m
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case00035.m
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sbmltranslator
00001-sbml-l3v1.m
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00002-sbml-l3v1.m
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00004-sbml-l3v1.m
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00019-sbml-l3v1.m
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00029-sbml-l3v1.m
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00035-sbml-l3v1.m
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README.md
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requirements.txt
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setup.py
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tests
.gitignore
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README.md
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converter_test
README.md
171 Bytes
converter-test-cases
valid_01.m
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valid_01.ode
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valid_01.xml
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valid_02.m
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valid_02.xml
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valid_03.m
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valid_03.xml
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valid_04.m
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valid_04.xml
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valid_05.xml
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valid_50.m
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valid_50.xml
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valid_52.xml
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valid_53.m
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valid_53.xml
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valid_54.m
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valid_54.xml
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valid_55.m
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valid_55.xml
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valid_56.m
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valid_56.ode
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valid_56.xml
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valid_57.m
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valid_57.xml
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valid_58.m
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valid_58.ode
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valid_58.xml
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run-converter-tests.py
1.5 kB
test_convert_to_sbml.py
2.4 kB
test_convert_to_xpp.py
2.4 kB
evaluate_test
evaluate-test-cases
valid_01.m
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valid_01.txt
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136 Bytes
valid_144.txt
1.2 kB
valid_145.m
78 Bytes
valid_145.txt
769 Bytes
valid_146.m
34 Bytes
valid_146.txt
426 Bytes
valid_147.m
42 Bytes
valid_147.txt
383 Bytes
valid_148.m
94 Bytes
valid_148.txt
1.1 kB
valid_149.m
9 Bytes
valid_149.txt
84 Bytes
valid_150.m
64 Bytes
valid_150.txt
892 Bytes
valid_151.m
20 Bytes
valid_151.txt
193 Bytes
valid_152.m
120 Bytes
valid_152.txt
473 Bytes
valid_153.m
437 Bytes
valid_153.txt
7.3 kB
valid_154.m
82 Bytes
valid_154.txt
206 Bytes
valid_155.m
31 Bytes
valid_155.txt
221 Bytes
valid_156.m
225 Bytes
valid_156.txt
1.2 kB
valid_157.m
18 Bytes
valid_157.txt
142 Bytes
valid_158.m
43 Bytes
valid_158.txt
134 Bytes
valid_159.m
66 Bytes
valid_159.txt
296 Bytes
valid_160.m
127 Bytes
valid_160.txt
394 Bytes
valid_161.m
451 Bytes
valid_161.txt
3.9 kB
valid_162.m
307 Bytes
valid_162.txt
2.7 kB
valid_163.m
571 Bytes
valid_163.txt
3.2 kB
valid_164.m
403 Bytes
valid_164.txt
2.7 kB
valid_165.m
119 Bytes
valid_165.txt
572 Bytes
valid_166.m
36 Bytes
valid_166.txt
188 Bytes
valid_167.m
58 Bytes
valid_167.txt
292 Bytes
valid_168.m
78 Bytes
valid_168.txt
614 Bytes
valid_169.m
90 Bytes
valid_169.txt
687 Bytes
valid_170.m
192 Bytes
valid_170.txt
1.5 kB
valid_171.m
365 Bytes
valid_171.txt
7.3 kB
valid_172.m
316 Bytes
valid_172.txt
5.9 kB
valid_173.m
156 Bytes
valid_173.txt
1.1 kB
valid_174.m
74 Bytes
valid_174.txt
153 Bytes
valid_175.m
18 Bytes
valid_175.txt
215 Bytes
valid_176.m
24 Bytes
valid_176.txt
215 Bytes
valid_177.m
32 Bytes
valid_177.txt
288 Bytes
valid_178.m
16 Bytes
valid_178.txt
213 Bytes
valid_179.m
14 Bytes
valid_179.txt
166 Bytes
valid_180.m
21 Bytes
valid_180.txt
276 Bytes
valid_181.m
25 Bytes
valid_181.txt
305 Bytes
valid_182.m
114 Bytes
valid_182.txt
1.6 kB
valid_183.m
413 Bytes
valid_183.txt
7.4 kB
valid_184.m
54 Bytes
valid_184.txt
569 Bytes
valid_185.m
274 Bytes
valid_185.txt
1.2 kB
valid_186.m
30 Bytes
valid_186.txt
309 Bytes
valid_187.m
17 Bytes
valid_187.txt
147 Bytes
valid_188.m
22 Bytes
valid_188.txt
145 Bytes
valid_189.m
60 Bytes
valid_189.txt
595 Bytes
valid_190.m
123 Bytes
valid_190.txt
1.2 kB
valid_191.m
29 Bytes
valid_191.txt
249 Bytes
valid_192.m
62 Bytes
valid_192.txt
453 Bytes
valid_193.m
99 Bytes
valid_193.txt
1.1 kB
valid_194.m
179 Bytes
valid_194.txt
3.3 kB
valid_195.m
156 Bytes
valid_195.txt
1.1 kB
valid_196.m
351 Bytes
valid_196.txt
6.0 kB
valid_197.m
74 Bytes
valid_197.txt
154 Bytes
valid_198.m
32 Bytes
valid_198.txt
292 Bytes
valid_199.m
160 Bytes
valid_199.txt
1.9 kB
valid_200.m
81 Bytes
valid_200.txt
1.0 kB
valid_201.m
446 Bytes
valid_201.txt
8.6 kB
valid_202.m
13 Bytes
valid_202.txt
97 Bytes
valid_203.m
20 Bytes
valid_203.txt
120 Bytes
valid_204.m
23 Bytes
valid_204.txt
95 Bytes
valid_205.m
30 Bytes
valid_205.txt
118 Bytes
valid_206.m
55 Bytes
valid_206.txt
311 Bytes
valid_207.m
95 Bytes
valid_207.txt
581 Bytes
valid_208.m
8 Bytes
valid_208.txt
48 Bytes
valid_209.m
18 Bytes
valid_209.txt
215 Bytes
valid_210.m
14 Bytes
valid_210.txt
48 Bytes
valid_211.m
32 Bytes
valid_211.txt
304 Bytes
valid_212.m
44 Bytes
valid_212.txt
607 Bytes
valid_213.m
23 Bytes
valid_213.txt
146 Bytes
valid_214.m
36 Bytes
valid_214.txt
288 Bytes
valid_215.m
15 Bytes
valid_215.txt
145 Bytes
valid_216.m
30 Bytes
valid_216.txt
181 Bytes
valid_217.m
23 Bytes
valid_217.txt
95 Bytes
valid_218.m
65 Bytes
valid_218.txt
305 Bytes
valid_219.m
68 Bytes
valid_219.txt
353 Bytes
valid_220.m
117 Bytes
valid_220.txt
433 Bytes
valid_221.m
86 Bytes
valid_221.txt
385 Bytes
valid_222.m
326 Bytes
valid_222.txt
1.4 kB
valid_223.m
119 Bytes
valid_223.txt
498 Bytes
valid_224.m
85 Bytes
valid_224.txt
874 Bytes
valid_225.m
85 Bytes
valid_225.txt
931 Bytes
valid_226.m
24 Bytes
valid_226.txt
172 Bytes
valid_227.m
20 Bytes
valid_227.txt
182 Bytes
test_syntaxModule.py
3.1 kB
tox.ini
246 Bytes