equivalence_paper_analysis.zip
The previewer is not showing all the files.
__MACOSX
._equivalence_paper_analysis
504 Bytes
equivalence_paper_analysis
._.DS_Store
120 Bytes
._P_colors.mat
504 Bytes
._P_data_processed.mat
552 Bytes
._P_manual_classify.mat
552 Bytes
._RP_colors.mat
504 Bytes
._bhv_classify.mat
552 Bytes
._bmp_aa_r&d_sequences.xlsx
504 Bytes
._figure_1
504 Bytes
._figure_2
504 Bytes
._figure_3
504 Bytes
._figure_4
504 Bytes
._figure_5
504 Bytes
._figure_6
504 Bytes
._figure_7
504 Bytes
._figure_s1
504 Bytes
._figure_s2
504 Bytes
._figure_s3
504 Bytes
._figure_s4
504 Bytes
._figure_s5
504 Bytes
._figure_s6
504 Bytes
._figure_s7
504 Bytes
._figure_s8
504 Bytes
._figure_s9
552 Bytes
._parameter_fitting_top_fits.pkl
552 Bytes
._process_raw_data
504 Bytes
._processed_qpcr_data
504 Bytes
figure_1
._.ipynb_checkpoints
504 Bytes
._archs_h5_to_csv.ipynb
504 Bytes
._archs_ligand_expression.ipynb
504 Bytes
._archs_parse_meta.ipynb
504 Bytes
._bmp_archs.csv
504 Bytes
._meta_archs.csv
504 Bytes
._sample_characteristics_archs.csv
504 Bytes
.ipynb_checkpoints
._archs_h5_to_csv-checkpoint.ipynb
504 Bytes
._archs_ligand_expression-checkpoint.ipynb
504 Bytes
._archs_parse_meta-checkpoint.ipynb
504 Bytes
figure_2
._figure_2bcde.m
504 Bytes
._figure_2f.m
504 Bytes
figure_3
._figure_3b.m
552 Bytes
._figure_3cde.m
552 Bytes
figure_4
._E14 NG C2C12 3T3 RNASeq - Yaron.csv
504 Bytes
._figure_4a.m
504 Bytes
._figure_4bcd.m
504 Bytes
figure_5
._figure_5abc.m
504 Bytes
figure_6
._figure_6a.m
504 Bytes
._figure_6c.m
504 Bytes
._figure_6d.m
504 Bytes
figure_7
._.ipynb_checkpoints
504 Bytes
._A1 knockdown_T_ligand_pairs.pdf
552 Bytes
._A1 knockdown_T_single_ligands.pdf
552 Bytes
._cartoon_responses.pdf
552 Bytes
._figure_7bcde.ipynb
552 Bytes
._figure_7fghi.ipynb
552 Bytes
._params_as_lines.pdf
552 Bytes
._wild-type_T_ligand_pairs.pdf
552 Bytes
._wild-type_T_single_ligands.pdf
552 Bytes
.ipynb_checkpoints
._PF026_figure_7_plots-checkpoint.ipynb
552 Bytes
._figure_7bcde-checkpoint.ipynb
552 Bytes
._figure_7fghi-checkpoint.ipynb
552 Bytes
figure_s1
._P016 All Gradients (D1) 20170417
504 Bytes
._P016_all_grads.mat
504 Bytes
._P016_human_protocol.xlsx
504 Bytes
._figure_s1bc.m
504 Bytes
._figure_s1def.m
552 Bytes
._figure_s1g.m
504 Bytes
P016 All Gradients (D1) 20170417
._P016.efl
504 Bytes
._P016_expt_info
504 Bytes
._P016_gradients_raw.pdf
504 Bytes
._P016_heatmap_alldata_raw.pdf
504 Bytes
._P016_process_cell_count.png
504 Bytes
._P016_protocol.xlsx
504 Bytes
._P016_raw_data
504 Bytes
P016_raw_data
._2017-04-17YA.0008.fcs
504 Bytes
._2017-04-17YA.0009.fcs
504 Bytes
._2017-04-17YA.0018.fcs
504 Bytes
._2017-04-17YA.0019.fcs
504 Bytes
._2017-04-17YA.0020.fcs
504 Bytes
._2017-04-17YA.0021.fcs
504 Bytes
._2017-04-17YA.0022.fcs
504 Bytes
._2017-04-17YA.0023.fcs
504 Bytes
._2017-04-17YA.0024.fcs
504 Bytes
._2017-04-17YA.0025.fcs
504 Bytes
._2017-04-17YA.0026.fcs
504 Bytes
._2017-04-17YA.0027.fcs
504 Bytes
._2017-04-17YA.0030.fcs
504 Bytes
._2017-04-17YA.0031.fcs
504 Bytes
._2017-04-17YA.0032.fcs
504 Bytes
._2017-04-17YA.0033.fcs
504 Bytes
._2017-04-17YA.0034.fcs
504 Bytes
._2017-04-17YA.0035.fcs
504 Bytes
._2017-04-17YA.0036.fcs
504 Bytes
._2017-04-17YA.0037.fcs
504 Bytes
._2017-04-17YA.0040.mqd
504 Bytes
._2017-04-17YA.0041.mqd
504 Bytes
._2017-04-17YA.0042.mqd
504 Bytes
._2017-04-17YA.0043.mqd
504 Bytes
._2017-04-17YA.0044.mqd
504 Bytes
._2017-04-17YA.0045.mqd
504 Bytes
._2017-04-17YA.0046.mqd
504 Bytes
._2017-04-17YA.0047.mqd
504 Bytes
._2017-04-17YA.0050.mqd
504 Bytes
._2017-04-17YA.0051.mqd
504 Bytes
._2017-04-17YA.0052.mqd
504 Bytes
._2017-04-17YA.0053.mqd
504 Bytes
._2017-04-17YA.0054.mqd
504 Bytes
._2017-04-17YA.0055.mqd
504 Bytes
._2017-04-17YA.0056.mqd
504 Bytes
._2017-04-17YA.0057.mqd
504 Bytes
._2017-04-17YA.0068.mqd
504 Bytes
._2017-04-17YA.0069.mqd
504 Bytes
._2017-04-17YA.0078.mqd
504 Bytes
._2017-04-17YA.0079.mqd
504 Bytes
._2017-04-17YA.0080.mqd
504 Bytes
._2017-04-17YA.0081.mqd
504 Bytes
._2017-04-17YA.0082.mqd
504 Bytes
._2017-04-17YA.0083.mqd
504 Bytes
._2017-04-17YA.0084.mqd
504 Bytes
._2017-04-17YA.0085.mqd
504 Bytes
._2017-04-17YA.0086.mqd
504 Bytes
._2017-04-17YA.0087.mqd
504 Bytes
._2017-04-17YA.0090.mqd
504 Bytes
._2017-04-17YA.0091.mqd
504 Bytes
._2017-04-17YA.0092.mqd
504 Bytes
._2017-04-17YA.0093.mqd
504 Bytes
._2017-04-17YA.0094.mqd
504 Bytes
._2017-04-17YA.0095.mqd
504 Bytes
._2017-04-17YA.0096.mqd
504 Bytes
._2017-04-17YA.0097.mqd
504 Bytes
._2017-04-17YA.0108.mqd
504 Bytes
._2017-04-17YA.0109.mqd
504 Bytes
._2017-04-17YA.0118.mqd
504 Bytes
._2017-04-17YA.0119.mqd
504 Bytes
._2017-04-17YA.0120.mqd
504 Bytes
._2017-04-17YA.0121.mqd
504 Bytes
._2017-04-17YA.0122.mqd
504 Bytes
._2017-04-17YA.0123.mqd
504 Bytes
._2017-04-17YA.0124.mqd
504 Bytes
._2017-04-17YA.0125.mqd
504 Bytes
._2017-04-17YA.0126.mqd
504 Bytes
._2017-04-17YA.0127.mqd
504 Bytes
._2017-04-17YA.0130.mqd
504 Bytes
._2017-04-17YA.0131.mqd
504 Bytes
._2017-04-17YA.0132.mqd
504 Bytes
._2017-04-17YA.0133.mqd
504 Bytes
._2017-04-17YA.0134.mqd
504 Bytes
._2017-04-17YA.0135.mqd
504 Bytes
._2017-04-17YA.0136.mqd
504 Bytes
._2017-04-17YA.0137.mqd
504 Bytes
._2017-04-17YA.0140.fcs
504 Bytes
._2017-04-17YA.0141.fcs
504 Bytes
._2017-04-17YA.0142.fcs
504 Bytes
._2017-04-17YA.0143.fcs
504 Bytes
._2017-04-17YA.0144.fcs
504 Bytes
._2017-04-17YA.0145.fcs
504 Bytes
._2017-04-17YA.0146.fcs
504 Bytes
._2017-04-17YA.0147.fcs
504 Bytes
._2017-04-17YA.0150.fcs
504 Bytes
._2017-04-17YA.0151.fcs
504 Bytes
._2017-04-17YA.0152.fcs
504 Bytes
._2017-04-17YA.0153.fcs
504 Bytes
._2017-04-17YA.0154.fcs
504 Bytes
._2017-04-17YA.0155.fcs
504 Bytes
._2017-04-17YA.0156.fcs
504 Bytes
._2017-04-17YA.0157.fcs
504 Bytes
._2017-04-17YA.0168.fcs
504 Bytes
._2017-04-17YA.0169.fcs
504 Bytes
._2017-04-17YA.0178.fcs
504 Bytes
._2017-04-17YA.0179.fcs
504 Bytes
._2017-04-17YA.0180.fcs
504 Bytes
figure_s2
._figure_s2b.m
552 Bytes
._figure_s2cdef.m
504 Bytes
figure_s3
._E001_all_data_for_MATLAB.csv
552 Bytes
._E001_ic_values_for_MATLAB.csv
552 Bytes
._P086.mat
504 Bytes
._P086_Y7_some_matrices
504 Bytes
._figure_s3a.m
504 Bytes
._figure_s3bcd.m
504 Bytes
._figure_s3e.m
504 Bytes
._figure_s3fghijk.m
552 Bytes
._figure_s3fi.pdf
608 Bytes
._figure_s3gj.pdf
608 Bytes
._figure_s3hk.pdf
608 Bytes
P086_Y7_some_matrices
._P086.efl
504 Bytes
._P086_all_grads.pdf
504 Bytes
._P086_all_heatmaps.pdf
504 Bytes
._P086_expt_info
504 Bytes
._P086_fcs_files.xlsx
504 Bytes
._P086_process_background_ecdf.png
504 Bytes
._P086_process_cell_count.png
504 Bytes
._P086_raw_data
504 Bytes
._P086_some_heatmaps.pdf
504 Bytes
figure_s4
._.DS_Store
120 Bytes
._RP050_d1_shrna_br2_control_rims
504 Bytes
._RP066
504 Bytes
._figure_s4a.m
504 Bytes
._figure_s4b.m
504 Bytes
._figure_s4b.mat
504 Bytes
._figure_s4cde.m
504 Bytes
._figure_s4fgh.m
504 Bytes
RP050_d1_shrna_br2_control_rims
._Backup
504 Bytes
._RP050.efl
504 Bytes
._RP050_all_grads_BMPR2 shRNA 2A_raw.pdf
504 Bytes
._RP050_all_grads_BMPR2 shRNA 2A_resc.pdf
504 Bytes
._RP050_all_grads_BMPR2 siRNA_raw.pdf
504 Bytes
._RP050_all_grads_BMPR2 siRNA_resc.pdf
504 Bytes
._RP050_all_grads_D1_raw.pdf
504 Bytes
._RP050_all_grads_D1_resc.pdf
504 Bytes
._RP050_all_grads_Non-targeting shRNA_raw.pdf
504 Bytes
._RP050_all_grads_Non-targeting shRNA_resc.pdf
504 Bytes
._RP050_all_grads_eigs_BMPR2 shRNA 2A_raw.pdf
504 Bytes
._RP050_all_grads_eigs_BMPR2 shRNA 2A_resc.pdf
504 Bytes
._RP050_all_grads_eigs_BMPR2 siRNA_raw.pdf
504 Bytes
._RP050_all_grads_eigs_BMPR2 siRNA_resc.pdf
504 Bytes
._RP050_all_grads_eigs_D1_raw.pdf
504 Bytes
._RP050_all_grads_eigs_D1_resc.pdf
504 Bytes
._RP050_all_grads_eigs_Non-targeting shRNA_raw.pdf
504 Bytes
._RP050_all_grads_eigs_Non-targeting shRNA_resc.pdf
504 Bytes
._RP050_all_rims_eigs_BMPR2 shRNA 2A_raw.pdf
504 Bytes
._RP050_all_rims_eigs_BMPR2 shRNA 2A_resc.pdf
504 Bytes
._RP050_all_rims_eigs_BMPR2 siRNA_raw.pdf
504 Bytes
._RP050_all_rims_eigs_BMPR2 siRNA_resc.pdf
504 Bytes
._RP050_all_rims_eigs_D1_raw.pdf
504 Bytes
._RP050_all_rims_eigs_D1_resc.pdf
504 Bytes
._RP050_all_rims_eigs_Non-targeting shRNA_raw.pdf
504 Bytes
._RP050_all_rims_eigs_Non-targeting shRNA_resc.pdf
504 Bytes
._RP050_all_rims_grads_BMPR2 shRNA 2A_raw.pdf
504 Bytes
._RP050_all_rims_grads_BMPR2 shRNA 2A_resc.pdf
504 Bytes
._RP050_all_rims_grads_BMPR2 siRNA_raw.pdf
504 Bytes
._RP050_all_rims_grads_BMPR2 siRNA_resc.pdf
504 Bytes
._RP050_all_rims_grads_D1_raw.pdf
504 Bytes
._RP050_all_rims_grads_D1_resc.pdf
504 Bytes
._RP050_all_rims_grads_Non-targeting shRNA_raw.pdf
504 Bytes
._RP050_all_rims_grads_Non-targeting shRNA_resc.pdf
504 Bytes
._RP050_cp_bmp4_response.png
504 Bytes
._RP050_expt_info
504 Bytes
._RP050_fcs_files.xlsx
504 Bytes
._RP050_process_background.png
504 Bytes
._RP050_process_cell_count.png
504 Bytes
._RP050_process_rescaling.png
504 Bytes
._RP050_process_rescaling_cv.png
504 Bytes
._RP050_process_scaling_factors.png
504 Bytes
._RP050_raw_data
504 Bytes
._RP050_rim_comparison_plot_1.pdf
504 Bytes
._RP050_rim_comparison_plot_2.pdf
504 Bytes
RP066
._RP066.efl
504 Bytes
._RP066_all_grads_ACVR1 shRNA 123A mono K6_raw.pdf
504 Bytes
._RP066_all_grads_ACVR1 shRNA 123A mono K6_resc.pdf
504 Bytes
._RP066_all_grads_AVCR1 siRNA_raw.pdf
504 Bytes
._RP066_all_grads_AVCR1 siRNA_resc.pdf
504 Bytes
._RP066_all_grads_D1_raw.pdf
504 Bytes
._RP066_all_grads_D1_resc.pdf
504 Bytes
._RP066_all_grads_eigs_ACVR1 shRNA 123A mono K6_raw.pdf
504 Bytes
._RP066_all_grads_eigs_ACVR1 shRNA 123A mono K6_resc.pdf
504 Bytes
._RP066_all_grads_eigs_AVCR1 siRNA_raw.pdf
504 Bytes
._RP066_all_grads_eigs_AVCR1 siRNA_resc.pdf
504 Bytes
._RP066_all_grads_eigs_D1_raw.pdf
504 Bytes
._RP066_all_grads_eigs_D1_resc.pdf
504 Bytes
._RP066_all_rims_eigs_ACVR1 shRNA 123A mono K6_raw.pdf
504 Bytes
._RP066_all_rims_eigs_ACVR1 shRNA 123A mono K6_resc.pdf
504 Bytes
._RP066_all_rims_eigs_AVCR1 siRNA_raw.pdf
504 Bytes
._RP066_all_rims_eigs_AVCR1 siRNA_resc.pdf
504 Bytes
._RP066_all_rims_eigs_D1_raw.pdf
504 Bytes
._RP066_all_rims_eigs_D1_resc.pdf
504 Bytes
._RP066_all_rims_grads_ACVR1 shRNA 123A mono K6_raw.pdf
504 Bytes
._RP066_all_rims_grads_ACVR1 shRNA 123A mono K6_resc.pdf
504 Bytes
._RP066_all_rims_grads_AVCR1 siRNA_raw.pdf
504 Bytes
._RP066_all_rims_grads_AVCR1 siRNA_resc.pdf
504 Bytes
._RP066_all_rims_grads_D1_raw.pdf
504 Bytes
._RP066_all_rims_grads_D1_resc.pdf
504 Bytes
._RP066_expt_info
504 Bytes
._RP066_heatmap_alldata_ACVR1 shRNA 123A mono K6_raw.pdf
504 Bytes
._RP066_heatmap_alldata_ACVR1 shRNA 123A mono K6_resc.pdf
504 Bytes
._RP066_heatmap_alldata_AVCR1 siRNA_raw.pdf
504 Bytes
._RP066_heatmap_alldata_AVCR1 siRNA_resc.pdf
504 Bytes
._RP066_heatmap_alldata_D1_raw.pdf
504 Bytes
._RP066_heatmap_alldata_D1_resc.pdf
504 Bytes
._RP066_process_background.png
504 Bytes
._RP066_process_cell_count.png
504 Bytes
._RP066_process_rescaling.png
504 Bytes
._RP066_process_rescaling_cv.png
504 Bytes
._RP066_process_scaling_factors.png
504 Bytes
._RP066_rim_comparison_plot_1.pdf
504 Bytes
._RP066_rim_comparison_plot_2.pdf
504 Bytes
._RP066_rim_comparison_plot_3.pdf
504 Bytes
._RP066_rim_comparison_plot_4.pdf
504 Bytes
figure_s5
._.DS_Store
120 Bytes
._RP050_d1_shrna_br2_control_rims
504 Bytes
._RP057_shrna_acvr1_bmpr1a_minimal_rims
504 Bytes
._figure_s5a.m
504 Bytes
._figure_s5b.m
504 Bytes
._figure_s5b.mat
504 Bytes
._figure_s5cdefg.m
504 Bytes
._figure_s5hij.m
504 Bytes
RP050_d1_shrna_br2_control_rims
._Backup
504 Bytes
._RP050.efl
504 Bytes
._RP050_all_grads_BMPR2 shRNA 2A_raw.pdf
504 Bytes
._RP050_all_grads_BMPR2 shRNA 2A_resc.pdf
504 Bytes
._RP050_all_grads_BMPR2 siRNA_raw.pdf
504 Bytes
._RP050_all_grads_BMPR2 siRNA_resc.pdf
504 Bytes
._RP050_all_grads_D1_raw.pdf
504 Bytes
._RP050_all_grads_D1_resc.pdf
504 Bytes
._RP050_all_grads_Non-targeting shRNA_raw.pdf
504 Bytes
._RP050_all_grads_Non-targeting shRNA_resc.pdf
504 Bytes
._RP050_all_grads_eigs_BMPR2 shRNA 2A_raw.pdf
504 Bytes
._RP050_all_grads_eigs_BMPR2 shRNA 2A_resc.pdf
504 Bytes
._RP050_all_grads_eigs_BMPR2 siRNA_raw.pdf
504 Bytes
._RP050_all_grads_eigs_BMPR2 siRNA_resc.pdf
504 Bytes
._RP050_all_grads_eigs_D1_raw.pdf
504 Bytes
._RP050_all_grads_eigs_D1_resc.pdf
504 Bytes
._RP050_all_grads_eigs_Non-targeting shRNA_raw.pdf
504 Bytes
._RP050_all_grads_eigs_Non-targeting shRNA_resc.pdf
504 Bytes
._RP050_all_rims_eigs_BMPR2 shRNA 2A_raw.pdf
504 Bytes
._RP050_all_rims_eigs_BMPR2 shRNA 2A_resc.pdf
504 Bytes
._RP050_all_rims_eigs_BMPR2 siRNA_raw.pdf
504 Bytes
._RP050_all_rims_eigs_BMPR2 siRNA_resc.pdf
504 Bytes
._RP050_all_rims_eigs_D1_raw.pdf
504 Bytes
._RP050_all_rims_eigs_D1_resc.pdf
504 Bytes
._RP050_all_rims_eigs_Non-targeting shRNA_raw.pdf
504 Bytes
._RP050_all_rims_eigs_Non-targeting shRNA_resc.pdf
504 Bytes
._RP050_all_rims_grads_BMPR2 shRNA 2A_raw.pdf
504 Bytes
._RP050_all_rims_grads_BMPR2 shRNA 2A_resc.pdf
504 Bytes
._RP050_all_rims_grads_BMPR2 siRNA_raw.pdf
504 Bytes
._RP050_all_rims_grads_BMPR2 siRNA_resc.pdf
504 Bytes
._RP050_all_rims_grads_D1_raw.pdf
504 Bytes
._RP050_all_rims_grads_D1_resc.pdf
504 Bytes
._RP050_all_rims_grads_Non-targeting shRNA_raw.pdf
504 Bytes
._RP050_all_rims_grads_Non-targeting shRNA_resc.pdf
504 Bytes
._RP050_cp_bmp4_response.png
504 Bytes
._RP050_expt_info
504 Bytes
._RP050_fcs_files.xlsx
504 Bytes
._RP050_process_background.png
504 Bytes
._RP050_process_cell_count.png
504 Bytes
._RP050_process_rescaling.png
504 Bytes
._RP050_process_rescaling_cv.png
504 Bytes
._RP050_process_scaling_factors.png
504 Bytes
._RP050_raw_data
504 Bytes
._RP050_rim_comparison_plot_1.pdf
504 Bytes
._RP050_rim_comparison_plot_2.pdf
504 Bytes
RP057_shrna_acvr1_bmpr1a_minimal_rims
._RP057.efl
504 Bytes
._RP057_acvr1_kd_effect_on_bmp9.jpg
504 Bytes
._RP057_all_grads_ACVR1 shRNA 123A_raw.pdf
504 Bytes
._RP057_all_grads_ACVR1 shRNA 123A_resc.pdf
504 Bytes
._RP057_all_grads_AVCR1 siRNA_raw.pdf
504 Bytes
._RP057_all_grads_AVCR1 siRNA_resc.pdf
504 Bytes
._RP057_all_grads_BMPR1A shRNA 3C_raw.pdf
504 Bytes
._RP057_all_grads_BMPR1A shRNA 3C_resc.pdf
504 Bytes
._RP057_all_grads_BMPR1A siRNA_raw.pdf
504 Bytes
._RP057_all_grads_BMPR1A siRNA_resc.pdf
504 Bytes
._RP057_all_grads_D1_raw.pdf
504 Bytes
._RP057_all_grads_D1_resc.pdf
504 Bytes
._RP057_all_grads_eigs_ACVR1 shRNA 123A_raw.pdf
504 Bytes
._RP057_all_grads_eigs_ACVR1 shRNA 123A_resc.pdf
504 Bytes
._RP057_all_grads_eigs_AVCR1 siRNA_raw.pdf
504 Bytes
._RP057_all_grads_eigs_AVCR1 siRNA_resc.pdf
504 Bytes
._RP057_all_grads_eigs_BMPR1A shRNA 3C_raw.pdf
504 Bytes
._RP057_all_grads_eigs_BMPR1A shRNA 3C_resc.pdf
504 Bytes
._RP057_all_grads_eigs_BMPR1A siRNA_raw.pdf
504 Bytes
._RP057_all_grads_eigs_BMPR1A siRNA_resc.pdf
504 Bytes
._RP057_all_grads_eigs_D1_raw.pdf
504 Bytes
._RP057_all_grads_eigs_D1_resc.pdf
504 Bytes
._RP057_all_rims_eigs_ACVR1 shRNA 123A_raw.pdf
504 Bytes
._RP057_all_rims_eigs_ACVR1 shRNA 123A_resc.pdf
504 Bytes
._RP057_all_rims_eigs_AVCR1 siRNA_raw.pdf
504 Bytes
._RP057_all_rims_eigs_AVCR1 siRNA_resc.pdf
504 Bytes
._RP057_all_rims_eigs_BMPR1A shRNA 3C_raw.pdf
504 Bytes
._RP057_all_rims_eigs_BMPR1A shRNA 3C_resc.pdf
504 Bytes
._RP057_all_rims_eigs_BMPR1A siRNA_raw.pdf
504 Bytes
._RP057_all_rims_eigs_BMPR1A siRNA_resc.pdf
504 Bytes
._RP057_all_rims_eigs_D1_raw.pdf
504 Bytes
._RP057_all_rims_eigs_D1_resc.pdf
504 Bytes
._RP057_all_rims_grads_ACVR1 shRNA 123A_raw.pdf
504 Bytes
._RP057_all_rims_grads_ACVR1 shRNA 123A_resc.pdf
504 Bytes
._RP057_all_rims_grads_AVCR1 siRNA_raw.pdf
504 Bytes
._RP057_all_rims_grads_AVCR1 siRNA_resc.pdf
504 Bytes
._RP057_all_rims_grads_BMPR1A shRNA 3C_raw.pdf
504 Bytes
._RP057_all_rims_grads_BMPR1A shRNA 3C_resc.pdf
504 Bytes
._RP057_all_rims_grads_BMPR1A siRNA_raw.pdf
504 Bytes
._RP057_all_rims_grads_BMPR1A siRNA_resc.pdf
504 Bytes
._RP057_all_rims_grads_D1_raw.pdf
504 Bytes
._RP057_all_rims_grads_D1_resc.pdf
504 Bytes
._RP057_expt_info
504 Bytes
._RP057_heatmap_alldata_ACVR1 shRNA 123A_raw.pdf
504 Bytes
._RP057_heatmap_alldata_ACVR1 shRNA 123A_resc.pdf
504 Bytes
._RP057_heatmap_alldata_AVCR1 siRNA_raw.pdf
504 Bytes
._RP057_heatmap_alldata_AVCR1 siRNA_resc.pdf
504 Bytes
._RP057_heatmap_alldata_BMPR1A shRNA 3C_raw.pdf
504 Bytes
._RP057_heatmap_alldata_BMPR1A shRNA 3C_resc.pdf
504 Bytes
._RP057_heatmap_alldata_BMPR1A siRNA_raw.pdf
504 Bytes
._RP057_heatmap_alldata_BMPR1A siRNA_resc.pdf
504 Bytes
._RP057_heatmap_alldata_D1_raw.pdf
504 Bytes
._RP057_heatmap_alldata_D1_resc.pdf
504 Bytes
._RP057_process_background.png
504 Bytes
._RP057_process_cell_count.png
504 Bytes
._RP057_process_rescaling.png
504 Bytes
._RP057_process_rescaling_cv.png
504 Bytes
._RP057_process_scaling_factors.png
504 Bytes
._RP057_raw_data
504 Bytes
._RP057_raw_data_by_condition.jpg
504 Bytes
._RP057_rim_comparison_plot_1.pdf
504 Bytes
._RP057_rim_comparison_plot_2.pdf
504 Bytes
._RP057_rim_comparison_plot_3.pdf
504 Bytes
._RP057_rim_comparison_plot_4.pdf
504 Bytes
._RP057_rim_comparison_plot_5.pdf
504 Bytes
figure_s6
._figure_s6a.m
504 Bytes
._figure_s6bcd.m
504 Bytes
._figure_s6e.m
504 Bytes
._figure_s6fgh.m
504 Bytes
figure_s7
._figure_s7a.m
504 Bytes
._figure_s7b.m
504 Bytes
figure_s8
._.ipynb_checkpoints
504 Bytes
._figure_s8a.ipynb
552 Bytes
._figure_s8cdefghijklmno.ipynb
552 Bytes
._parameter_fitting_filtered_fits.pkl
552 Bytes
._sensitivity_results_20210713-224808.pkl
552 Bytes
.ipynb_checkpoints
._figure_s8a-checkpoint.ipynb
552 Bytes
._figure_s8bcdefghij-checkpoint.ipynb
504 Bytes
._figure_s8cdefghijklmno-checkpoint.ipynb
552 Bytes
figure_s9
._.ipynb_checkpoints
552 Bytes
._figure_s9abcdefg.ipynb
552 Bytes
.ipynb_checkpoints
._figure_s9abcdefg-checkpoint.ipynb
552 Bytes
process_raw_data
._.DS_Store
120 Bytes
._.ipynb_checkpoints
504 Bytes
._BMP2_BMP9_matrices_compilation_E001.ipynb
652 Bytes
._BMP2_BMP9_matrices_compiled_data_processed.csv
552 Bytes
._H001_d1_gradients.m
552 Bytes
._H002_d1_gradients.m
552 Bytes
._H003_d1_gradients.m
552 Bytes
._P004_robot_all_gradients.m
552 Bytes
._P009_robot_all_gradients.m
552 Bytes
._P011_robot_all_gradients.m
552 Bytes
._P014_es_y7_grads.m
608 Bytes
._P016_robot_all_gradients.m
552 Bytes
._P020_es_y7_grads.m
552 Bytes
._P028_F17_allgrads_manual.m
552 Bytes
._P030_es_y7_grads_manual.m
552 Bytes
._P038_f17_all_rims.m
504 Bytes
._P040_f17_all_rims.m
504 Bytes
._P041_f17_all_rims.m
504 Bytes
._P044_f17_bmp8a_rims.m
504 Bytes
._P046_b6_gradients.m
504 Bytes
._P064_d1_some_rims.m
560 Bytes
._P065_d1_some_rims.m
504 Bytes
._P066_d1_some_rims.m
504 Bytes
._P067_d1_some_rims.m
504 Bytes
._P070_br2_shrna_2A_grads.m
504 Bytes
._P071_br2_shrna_2A_grads.m
504 Bytes
._P072_br2_shrna_2A_all_rims.m
504 Bytes
._P073_y7_all_rims.m
504 Bytes
._P074_br2_shrna_2A_all_rims.m
504 Bytes
._P075_y7_all_rims.m
504 Bytes
._P076_br2_shrna_2A_all_rims.m
504 Bytes
._P077_y7_all_rims.m
504 Bytes
._P078_y7_all_rims.m
504 Bytes
._P079_robot_all_gradients.m
504 Bytes
._P081_br1a_shrna_3c_all_gradients.m
504 Bytes
._P082_br1a_shrna_3c_all_rims.m
504 Bytes
._P084_br1a_shrna_3c_all_rims.m
504 Bytes
._P085_br1a_shrna_3c_all_rims.m
504 Bytes
._P087_ar1_shrna_k6_all_gradients.m
504 Bytes
._P088_br1a_shrna_3c_some_rims.m
504 Bytes
._P091_ar1_shrna_k6_all_gradients.m
504 Bytes
._P092_b6_all_rims.m
504 Bytes
._P093_b6_all_rims.m
504 Bytes
._P094_ar1_shrna_k6_all_rims.m
504 Bytes
._P095_ar1_shrna_k6_all_rims.m
504 Bytes
._P096_ar1_shrna_k6_all_rims.m
504 Bytes
._P098_ar1_shrna_k6_some_matrices.m
504 Bytes
._P099_ar1_shrna_k6_some_matrices.m
504 Bytes
._P101_b6_all_rims.m
504 Bytes
._P_receptor_profiles.ipynb
504 Bytes
._RP018_R1bOX_PCandMC_qPCR.ipynb
504 Bytes
._RP023_ALK1OX_MC_qPCR.ipynb
504 Bytes
._RP045_JML_BMPR2_shRNA_qPCR.ipynb
504 Bytes
._RP056_shRNA_ACVR1_BMPR1A_qPCR.ipynb
504 Bytes
._RP067_shRNA_ACVR1_BMPR1A_qPCR.ipynb
504 Bytes
._bmp_name_wrangle.m
504 Bytes
._classify_all_rim_data.m
504 Bytes
._parameter_fitting_filter_solutions.ipynb
552 Bytes
._parameter_fitting_filter_solutions_old.ipynb
552 Bytes
._process_all_gradient_data.m
552 Bytes
._process_all_rim_data.m
608 Bytes
._process_figures
504 Bytes
._sample_parameter_fitting_script.ipynb
552 Bytes
.ipynb_checkpoints
._BMP2_BMP9_matrices_compilation_E001-checkpoint.ipynb
552 Bytes
._P_receptor_profiles-checkpoint.ipynb
504 Bytes
._RP018_R1bOX_PCandMC_qPCR-checkpoint.ipynb
504 Bytes
._RP023_ALK1OX_MC_qPCR-checkpoint.ipynb
504 Bytes
._RP045_JML_BMPR2_shRNA_qPCR-checkpoint.ipynb
504 Bytes
._RP056_shRNA_ACVR1_BMPR1A_qPCR-checkpoint.ipynb
504 Bytes
._RP067_shRNA_ACVR1_BMPR1A_qPCR-checkpoint.ipynb
504 Bytes
._parameter_fitting_filter_solutions-checkpoint.ipynb
552 Bytes
._parameter_fitting_filter_solutions_old-checkpoint.ipynb
552 Bytes
._sample_parameter_fitting_script-checkpoint.ipynb
552 Bytes
processed_qpcr_data
._RP018_data_processed.csv
504 Bytes
._RP023_data_processed.csv
504 Bytes
._RP045_data_processed.csv
504 Bytes
._RP056_data_processed.csv
504 Bytes
._RP067_data_processed.csv
504 Bytes
._rec_qpcr.csv
560 Bytes
equivalence_paper_analysis
.DS_Store
14.3 kB
P_colors.mat
1.1 kB
P_data_processed.mat
548.0 kB
P_manual_classify.mat
6.8 kB
RP_colors.mat
754 Bytes
bhv_classify.mat
24.6 kB
bmp_aa_r&d_sequences.xlsx
34.9 kB
figure_1
.ipynb_checkpoints
archs_h5_to_csv-checkpoint.ipynb
35.7 kB
archs_ligand_expression-checkpoint.ipynb
3.2 MB
archs_parse_meta-checkpoint.ipynb
3.2 MB
archs_h5_to_csv.ipynb
35.7 kB
archs_ligand_expression.ipynb
3.2 MB
archs_parse_meta.ipynb
3.2 MB
bmp_archs.csv
7.5 MB
meta_archs.csv
123.9 MB
sample_characteristics_archs.csv
27.8 MB
figure_2
figure_2bcde.m
570 Bytes
figure_2f.m
3.7 kB
figure_3
figure_3b.m
5.5 kB
figure_3cde.m
657 Bytes
figure_4
E14 NG C2C12 3T3 RNASeq - Yaron.csv
1.6 MB
figure_4a.m
2.1 kB
figure_4bcd.m
1.1 kB
figure_5
figure_5abc.m
1.1 kB
figure_6
figure_6a.m
6.5 kB
figure_6c.m
2.0 kB
figure_6d.m
9.8 kB
figure_7
.ipynb_checkpoints
PF026_figure_7_plots-checkpoint.ipynb
1.8 MB
figure_7bcde-checkpoint.ipynb
3.3 MB
figure_7fghi-checkpoint.ipynb
22.8 kB
A1 knockdown_T_ligand_pairs.pdf
6.2 kB
A1 knockdown_T_single_ligands.pdf
5.9 kB
cartoon_responses.pdf
9.2 kB
figure_7bcde.ipynb
957.7 kB
figure_7fghi.ipynb
30.1 kB
params_as_lines.pdf
2.1 kB
wild-type_T_ligand_pairs.pdf
6.2 kB
wild-type_T_single_ligands.pdf
5.9 kB
figure_s1
P016 All Gradients (D1) 20170417
P016.efl
2.0 MB
P016_expt_info
P016_gradients_raw.pdf
22.0 kB
P016_heatmap_alldata_raw.pdf
100.3 kB
P016_process_cell_count.png
97.4 kB
P016_protocol.xlsx
24.9 kB
P016_raw_data
2017-04-17YA.0008.fcs
1.3 MB
2017-04-17YA.0009.fcs
1.4 MB
2017-04-17YA.0018.fcs
1.5 MB
2017-04-17YA.0019.fcs
1.5 MB
2017-04-17YA.0020.fcs
1.5 MB
2017-04-17YA.0021.fcs
1.6 MB
2017-04-17YA.0022.fcs
1.6 MB
2017-04-17YA.0023.fcs
1.6 MB
2017-04-17YA.0024.fcs
1.5 MB
2017-04-17YA.0025.fcs
1.7 MB
2017-04-17YA.0026.fcs
1.6 MB
2017-04-17YA.0027.fcs
1.7 MB
2017-04-17YA.0030.fcs
1.5 MB
2017-04-17YA.0031.fcs
1.5 MB
2017-04-17YA.0032.fcs
1.5 MB
2017-04-17YA.0033.fcs
1.7 MB
2017-04-17YA.0034.fcs
1.7 MB
2017-04-17YA.0035.fcs
1.8 MB
2017-04-17YA.0036.fcs
1.4 MB
2017-04-17YA.0037.fcs
1.5 MB
2017-04-17YA.0040.mqd
2.7 MB
2017-04-17YA.0041.mqd
2.7 MB
2017-04-17YA.0042.mqd
2.8 MB
2017-04-17YA.0043.mqd
2.9 MB
2017-04-17YA.0044.mqd
2.8 MB
2017-04-17YA.0045.mqd
3.0 MB
2017-04-17YA.0046.mqd
3.0 MB
2017-04-17YA.0047.mqd
3.0 MB
2017-04-17YA.0050.mqd
3.0 MB
2017-04-17YA.0051.mqd
2.8 MB
2017-04-17YA.0052.mqd
2.9 MB
2017-04-17YA.0053.mqd
3.1 MB
2017-04-17YA.0054.mqd
2.8 MB
2017-04-17YA.0055.mqd
2.7 MB
2017-04-17YA.0056.mqd
2.8 MB
2017-04-17YA.0057.mqd
3.0 MB
2017-04-17YA.0068.mqd
2.8 MB
2017-04-17YA.0069.mqd
2.9 MB
2017-04-17YA.0078.mqd
2.8 MB
2017-04-17YA.0079.mqd
2.8 MB
2017-04-17YA.0080.mqd
2.9 MB
2017-04-17YA.0081.mqd
3.0 MB
2017-04-17YA.0082.mqd
3.1 MB
2017-04-17YA.0083.mqd
3.1 MB
2017-04-17YA.0084.mqd
2.9 MB
2017-04-17YA.0085.fcs
1.8 MB
2017-04-17YA.0085.mqd
3.0 MB
2017-04-17YA.0086.mqd
3.3 MB
2017-04-17YA.0087.mqd
3.5 MB
2017-04-17YA.0090.mqd
3.5 MB
2017-04-17YA.0091.mqd
3.0 MB
2017-04-17YA.0092.mqd
3.3 MB
2017-04-17YA.0093.mqd
3.4 MB
2017-04-17YA.0094.mqd
3.3 MB
2017-04-17YA.0095.mqd
3.2 MB
2017-04-17YA.0096.mqd
3.3 MB
2017-04-17YA.0097.mqd
3.2 MB
2017-04-17YA.0108.mqd
3.3 MB
2017-04-17YA.0109.mqd
3.3 MB
2017-04-17YA.0118.mqd
3.5 MB
2017-04-17YA.0119.mqd
3.4 MB
2017-04-17YA.0120.mqd
3.5 MB
2017-04-17YA.0121.mqd
3.0 MB
2017-04-17YA.0122.mqd
2.9 MB
2017-04-17YA.0123.mqd
3.0 MB
2017-04-17YA.0124.mqd
3.3 MB
2017-04-17YA.0125.mqd
3.6 MB
2017-04-17YA.0126.mqd
3.4 MB
2017-04-17YA.0127.mqd
3.2 MB
2017-04-17YA.0130.mqd
3.1 MB
2017-04-17YA.0131.mqd
3.2 MB
2017-04-17YA.0132.mqd
3.4 MB
2017-04-17YA.0133.mqd
2.6 MB
2017-04-17YA.0134.mqd
2.6 MB
2017-04-17YA.0135.mqd
2.5 MB
2017-04-17YA.0136.mqd
3.0 MB
2017-04-17YA.0137.mqd
2.7 MB
2017-04-17YA.0140.fcs
1.9 MB
2017-04-17YA.0141.fcs
2.1 MB
2017-04-17YA.0142.fcs
2.2 MB
2017-04-17YA.0143.fcs
2.2 MB
2017-04-17YA.0144.fcs
2.0 MB
2017-04-17YA.0145.fcs
1.8 MB
2017-04-17YA.0146.fcs
1.7 MB
2017-04-17YA.0147.fcs
1.7 MB
2017-04-17YA.0150.fcs
2.1 MB
2017-04-17YA.0151.fcs
2.2 MB
2017-04-17YA.0152.fcs
2.3 MB
2017-04-17YA.0153.fcs
2.5 MB
2017-04-17YA.0154.fcs
2.5 MB
2017-04-17YA.0155.fcs
2.4 MB
2017-04-17YA.0156.fcs
2.4 MB
2017-04-17YA.0157.fcs
2.0 MB
2017-04-17YA.0168.fcs
2.4 MB
2017-04-17YA.0169.fcs
2.5 MB
2017-04-17YA.0178.fcs
2.3 MB
2017-04-17YA.0179.fcs
2.3 MB
2017-04-17YA.0180.fcs
2.5 MB
P016_all_grads.mat
6.0 kB
P016_human_protocol.xlsx
23.6 kB
figure_s1bc.m
3.3 kB
figure_s1def.m
415 Bytes
figure_s1g.m
653 Bytes
figure_s2
figure_s2b.m
5.3 kB
figure_s2cdef.m
1.0 kB
figure_s3
E001_all_data_for_MATLAB.csv
68.4 kB
E001_ic_values_for_MATLAB.csv
3.2 kB
P086.mat
6.9 kB
P086_Y7_some_matrices
P086.efl
3.6 MB
P086_all_grads.pdf
3.6 kB
P086_all_heatmaps.pdf
14.9 kB
P086_expt_info
P086_fcs_files.xlsx
20.8 kB
P086_process_background_ecdf.png
88.6 kB
P086_process_cell_count.png
96.7 kB
P086_raw_data
P086_some_heatmaps.pdf
39.6 kB
figure_s3a.m
378 Bytes
figure_s3bcd.m
1.4 kB
figure_s3e.m
6.5 kB
figure_s3fghijk.m
6.5 kB
figure_s3fi.pdf
52.3 kB
figure_s3gj.pdf
12.5 kB
figure_s3hk.pdf
18.5 kB
figure_s4
.DS_Store
6.1 kB
RP050_d1_shrna_br2_control_rims
Backup
RP050.efl
1.3 MB
RP050_all_grads_BMPR2 shRNA 2A_raw.pdf
4.6 kB
RP050_all_grads_BMPR2 shRNA 2A_resc.pdf
4.2 kB
RP050_all_grads_BMPR2 siRNA_raw.pdf
4.4 kB
RP050_all_grads_BMPR2 siRNA_resc.pdf
4.3 kB
RP050_all_grads_D1_raw.pdf
4.3 kB
RP050_all_grads_D1_resc.pdf
4.3 kB
RP050_all_grads_Non-targeting shRNA_raw.pdf
4.4 kB
RP050_all_grads_Non-targeting shRNA_resc.pdf
4.5 kB
RP050_all_grads_eigs_BMPR2 shRNA 2A_raw.pdf
5.2 kB
RP050_all_grads_eigs_BMPR2 shRNA 2A_resc.pdf
4.7 kB
RP050_all_grads_eigs_BMPR2 siRNA_raw.pdf
4.9 kB
RP050_all_grads_eigs_BMPR2 siRNA_resc.pdf
4.9 kB
RP050_all_grads_eigs_D1_raw.pdf
4.9 kB
RP050_all_grads_eigs_D1_resc.pdf
4.9 kB
RP050_all_grads_eigs_Non-targeting shRNA_raw.pdf
5.0 kB
RP050_all_grads_eigs_Non-targeting shRNA_resc.pdf
5.0 kB
RP050_all_rims_eigs_BMPR2 shRNA 2A_raw.pdf
7.2 kB
RP050_all_rims_eigs_BMPR2 shRNA 2A_resc.pdf
6.5 kB
RP050_all_rims_eigs_BMPR2 siRNA_raw.pdf
6.9 kB
RP050_all_rims_eigs_BMPR2 siRNA_resc.pdf
7.3 kB
RP050_all_rims_eigs_D1_raw.pdf
6.7 kB
RP050_all_rims_eigs_D1_resc.pdf
6.8 kB
RP050_all_rims_eigs_Non-targeting shRNA_raw.pdf
6.8 kB
RP050_all_rims_eigs_Non-targeting shRNA_resc.pdf
7.0 kB
RP050_all_rims_grads_BMPR2 shRNA 2A_raw.pdf
7.9 kB
RP050_all_rims_grads_BMPR2 shRNA 2A_resc.pdf
7.1 kB
RP050_all_rims_grads_BMPR2 siRNA_raw.pdf
7.4 kB
RP050_all_rims_grads_BMPR2 siRNA_resc.pdf
7.8 kB
RP050_all_rims_grads_D1_raw.pdf
7.4 kB
RP050_all_rims_grads_D1_resc.pdf
7.4 kB
RP050_all_rims_grads_Non-targeting shRNA_raw.pdf
7.4 kB
RP050_all_rims_grads_Non-targeting shRNA_resc.pdf
7.6 kB
RP050_cp_bmp4_response.png
42.6 kB
RP050_expt_info
RP050_fcs_files.xlsx
29.2 kB
RP050_process_background.png
82.9 kB
RP050_process_cell_count.png
98.9 kB
RP050_process_rescaling.png
231.6 kB
RP050_process_rescaling_cv.png
81.3 kB
RP050_process_scaling_factors.png
53.3 kB
RP050_raw_data
RP050_rim_comparison_plot_1.pdf
6.6 kB
RP050_rim_comparison_plot_2.pdf
6.6 kB
RP066
RP066.efl
3.7 MB
RP066_all_grads_ACVR1 shRNA 123A mono K6_raw.pdf
4.5 kB
RP066_all_grads_ACVR1 shRNA 123A mono K6_resc.pdf
4.3 kB
RP066_all_grads_AVCR1 siRNA_raw.pdf
4.5 kB
RP066_all_grads_AVCR1 siRNA_resc.pdf
4.6 kB
RP066_all_grads_D1_raw.pdf
4.8 kB
RP066_all_grads_D1_resc.pdf
4.8 kB
RP066_all_grads_eigs_ACVR1 shRNA 123A mono K6_raw.pdf
5.1 kB
RP066_all_grads_eigs_ACVR1 shRNA 123A mono K6_resc.pdf
4.8 kB
RP066_all_grads_eigs_AVCR1 siRNA_raw.pdf
5.1 kB
RP066_all_grads_eigs_AVCR1 siRNA_resc.pdf
5.2 kB
RP066_all_grads_eigs_D1_raw.pdf
6.3 kB
RP066_all_grads_eigs_D1_resc.pdf
6.4 kB
RP066_all_rims_eigs_ACVR1 shRNA 123A mono K6_raw.pdf
7.0 kB
RP066_all_rims_eigs_ACVR1 shRNA 123A mono K6_resc.pdf
7.4 kB
RP066_all_rims_eigs_AVCR1 siRNA_raw.pdf
6.9 kB
RP066_all_rims_eigs_AVCR1 siRNA_resc.pdf
7.3 kB
RP066_all_rims_eigs_D1_raw.pdf
6.8 kB
RP066_all_rims_eigs_D1_resc.pdf
6.7 kB
RP066_all_rims_grads_ACVR1 shRNA 123A mono K6_raw.pdf
7.6 kB
RP066_all_rims_grads_ACVR1 shRNA 123A mono K6_resc.pdf
8.0 kB
RP066_all_rims_grads_AVCR1 siRNA_raw.pdf
7.6 kB
RP066_all_rims_grads_AVCR1 siRNA_resc.pdf
7.9 kB
RP066_all_rims_grads_D1_raw.pdf
6.8 kB
RP066_all_rims_grads_D1_resc.pdf
6.8 kB
RP066_expt_info
RP066_heatmap_alldata_ACVR1 shRNA 123A mono K6_raw.pdf
81.5 kB
RP066_heatmap_alldata_ACVR1 shRNA 123A mono K6_resc.pdf
83.8 kB
RP066_heatmap_alldata_AVCR1 siRNA_raw.pdf
90.0 kB
RP066_heatmap_alldata_AVCR1 siRNA_resc.pdf
87.0 kB
RP066_heatmap_alldata_D1_raw.pdf
83.4 kB
RP066_heatmap_alldata_D1_resc.pdf
78.7 kB
RP066_process_background.png
93.0 kB
RP066_process_cell_count.png
96.1 kB
RP066_process_rescaling.png
232.6 kB
RP066_process_rescaling_cv.png
81.1 kB
RP066_process_scaling_factors.png
51.6 kB
RP066_rim_comparison_plot_1.pdf
6.6 kB
RP066_rim_comparison_plot_2.pdf
6.6 kB
RP066_rim_comparison_plot_3.pdf
6.7 kB
RP066_rim_comparison_plot_4.pdf
8.4 kB
figure_s4a.m
3.1 kB
figure_s4b.m
13.7 kB
figure_s4b.mat
21.9 kB
figure_s4cde.m
1.4 kB
figure_s4fgh.m
3.4 kB
figure_s5
.DS_Store
6.1 kB
RP050_d1_shrna_br2_control_rims
Backup
RP050.efl
1.3 MB
RP050_all_grads_BMPR2 shRNA 2A_raw.pdf
4.6 kB
RP050_all_grads_BMPR2 shRNA 2A_resc.pdf
4.2 kB
RP050_all_grads_BMPR2 siRNA_raw.pdf
4.4 kB
RP050_all_grads_BMPR2 siRNA_resc.pdf
4.3 kB
RP050_all_grads_D1_raw.pdf
4.3 kB
RP050_all_grads_D1_resc.pdf
4.3 kB
RP050_all_grads_Non-targeting shRNA_raw.pdf
4.4 kB
RP050_all_grads_Non-targeting shRNA_resc.pdf
4.5 kB
RP050_all_grads_eigs_BMPR2 shRNA 2A_raw.pdf
5.2 kB
RP050_all_grads_eigs_BMPR2 shRNA 2A_resc.pdf
4.7 kB
RP050_all_grads_eigs_BMPR2 siRNA_raw.pdf
4.9 kB
RP050_all_grads_eigs_BMPR2 siRNA_resc.pdf
4.9 kB
RP050_all_grads_eigs_D1_raw.pdf
4.9 kB
RP050_all_grads_eigs_D1_resc.pdf
4.9 kB
RP050_all_grads_eigs_Non-targeting shRNA_raw.pdf
5.0 kB
RP050_all_grads_eigs_Non-targeting shRNA_resc.pdf
5.0 kB
RP050_all_rims_eigs_BMPR2 shRNA 2A_raw.pdf
7.2 kB
RP050_all_rims_eigs_BMPR2 shRNA 2A_resc.pdf
6.5 kB
RP050_all_rims_eigs_BMPR2 siRNA_raw.pdf
6.9 kB
RP050_all_rims_eigs_BMPR2 siRNA_resc.pdf
7.3 kB
RP050_all_rims_eigs_D1_raw.pdf
6.7 kB
RP050_all_rims_eigs_D1_resc.pdf
6.8 kB
RP050_all_rims_eigs_Non-targeting shRNA_raw.pdf
6.8 kB
RP050_all_rims_eigs_Non-targeting shRNA_resc.pdf
7.0 kB
RP050_all_rims_grads_BMPR2 shRNA 2A_raw.pdf
7.9 kB
RP050_all_rims_grads_BMPR2 shRNA 2A_resc.pdf
7.1 kB
RP050_all_rims_grads_BMPR2 siRNA_raw.pdf
7.4 kB
RP050_all_rims_grads_BMPR2 siRNA_resc.pdf
7.8 kB
RP050_all_rims_grads_D1_raw.pdf
7.4 kB
RP050_all_rims_grads_D1_resc.pdf
7.4 kB
RP050_all_rims_grads_Non-targeting shRNA_raw.pdf
7.4 kB
RP050_all_rims_grads_Non-targeting shRNA_resc.pdf
7.6 kB
RP050_cp_bmp4_response.png
42.6 kB
RP050_expt_info
RP050_fcs_files.xlsx
29.2 kB
RP050_process_background.png
82.9 kB
RP050_process_cell_count.png
98.9 kB
RP050_process_rescaling.png
231.6 kB
RP050_process_rescaling_cv.png
81.3 kB
RP050_process_scaling_factors.png
53.3 kB
RP050_raw_data
RP050_rim_comparison_plot_1.pdf
6.6 kB
RP050_rim_comparison_plot_2.pdf
6.6 kB
RP057_shrna_acvr1_bmpr1a_minimal_rims
RP057.efl
6.8 MB
RP057_acvr1_kd_effect_on_bmp9.jpg
36.0 kB
RP057_all_grads_ACVR1 shRNA 123A_raw.pdf
4.3 kB
RP057_all_grads_ACVR1 shRNA 123A_resc.pdf
4.5 kB
RP057_all_grads_AVCR1 siRNA_raw.pdf
4.3 kB
RP057_all_grads_AVCR1 siRNA_resc.pdf
4.3 kB
RP057_all_grads_BMPR1A shRNA 3C_raw.pdf
4.2 kB
RP057_all_grads_BMPR1A shRNA 3C_resc.pdf
4.2 kB
RP057_all_grads_BMPR1A siRNA_raw.pdf
4.2 kB
RP057_all_grads_BMPR1A siRNA_resc.pdf
4.2 kB
RP057_all_grads_D1_raw.pdf
4.3 kB
RP057_all_grads_D1_resc.pdf
4.3 kB
RP057_all_grads_eigs_ACVR1 shRNA 123A_raw.pdf
4.8 kB
RP057_all_grads_eigs_ACVR1 shRNA 123A_resc.pdf
5.1 kB
RP057_all_grads_eigs_AVCR1 siRNA_raw.pdf
4.9 kB
RP057_all_grads_eigs_AVCR1 siRNA_resc.pdf
4.8 kB
RP057_all_grads_eigs_BMPR1A shRNA 3C_raw.pdf
4.8 kB
RP057_all_grads_eigs_BMPR1A shRNA 3C_resc.pdf
4.7 kB
RP057_all_grads_eigs_BMPR1A siRNA_raw.pdf
4.8 kB
RP057_all_grads_eigs_BMPR1A siRNA_resc.pdf
4.8 kB
RP057_all_grads_eigs_D1_raw.pdf
4.8 kB
RP057_all_grads_eigs_D1_resc.pdf
4.8 kB
RP057_all_rims_eigs_ACVR1 shRNA 123A_raw.pdf
7.4 kB
RP057_all_rims_eigs_ACVR1 shRNA 123A_resc.pdf
7.2 kB
RP057_all_rims_eigs_AVCR1 siRNA_raw.pdf
6.8 kB
RP057_all_rims_eigs_AVCR1 siRNA_resc.pdf
7.0 kB
RP057_all_rims_eigs_BMPR1A shRNA 3C_raw.pdf
7.2 kB
RP057_all_rims_eigs_BMPR1A shRNA 3C_resc.pdf
7.2 kB
RP057_all_rims_eigs_BMPR1A siRNA_raw.pdf
7.2 kB
RP057_all_rims_eigs_BMPR1A siRNA_resc.pdf
7.1 kB
RP057_all_rims_eigs_D1_raw.pdf
7.3 kB
RP057_all_rims_eigs_D1_resc.pdf
7.4 kB
RP057_all_rims_grads_ACVR1 shRNA 123A_raw.pdf
8.0 kB
RP057_all_rims_grads_ACVR1 shRNA 123A_resc.pdf
7.8 kB
RP057_all_rims_grads_AVCR1 siRNA_raw.pdf
7.4 kB
RP057_all_rims_grads_AVCR1 siRNA_resc.pdf
7.6 kB
RP057_all_rims_grads_BMPR1A shRNA 3C_raw.pdf
7.8 kB
RP057_all_rims_grads_BMPR1A shRNA 3C_resc.pdf
7.8 kB
RP057_all_rims_grads_BMPR1A siRNA_raw.pdf
7.7 kB
RP057_all_rims_grads_BMPR1A siRNA_resc.pdf
7.6 kB
RP057_all_rims_grads_D1_raw.pdf
7.9 kB
RP057_all_rims_grads_D1_resc.pdf
8.0 kB
RP057_expt_info
RP057_heatmap_alldata_ACVR1 shRNA 123A_raw.pdf
86.2 kB
RP057_heatmap_alldata_ACVR1 shRNA 123A_resc.pdf
84.7 kB
RP057_heatmap_alldata_AVCR1 siRNA_raw.pdf
85.1 kB
RP057_heatmap_alldata_AVCR1 siRNA_resc.pdf
84.5 kB
RP057_heatmap_alldata_BMPR1A shRNA 3C_raw.pdf
54.7 kB
RP057_heatmap_alldata_BMPR1A shRNA 3C_resc.pdf
58.2 kB
RP057_heatmap_alldata_BMPR1A siRNA_raw.pdf
52.5 kB
RP057_heatmap_alldata_BMPR1A siRNA_resc.pdf
51.3 kB
RP057_heatmap_alldata_D1_raw.pdf
80.3 kB
RP057_heatmap_alldata_D1_resc.pdf
84.8 kB
RP057_process_background.png
71.6 kB
RP057_process_cell_count.png
98.6 kB
RP057_process_rescaling.png
239.8 kB
RP057_process_rescaling_cv.png
79.9 kB
RP057_process_scaling_factors.png
55.1 kB
RP057_raw_data
RP057_raw_data_by_condition.jpg
32.0 kB
RP057_rim_comparison_plot_1.pdf
8.4 kB
RP057_rim_comparison_plot_2.pdf
8.4 kB
RP057_rim_comparison_plot_3.pdf
6.6 kB
RP057_rim_comparison_plot_4.pdf
6.7 kB
RP057_rim_comparison_plot_5.pdf
8.4 kB
figure_s5a.m
3.2 kB
figure_s5b.m
14.2 kB
figure_s5b.mat
27.7 kB
figure_s5cdefg.m
1.4 kB
figure_s5hij.m
728 Bytes
figure_s6
figure_s6a.m
2.2 kB
figure_s6bcd.m
710 Bytes
figure_s6e.m
352 Bytes
figure_s6fgh.m
718 Bytes
figure_s7
figure_s7a.m
800 Bytes
figure_s7b.m
9.1 kB
figure_s8
.ipynb_checkpoints
figure_s8a-checkpoint.ipynb
142.1 kB
figure_s8bcdefghij-checkpoint.ipynb
3.2 MB
figure_s8cdefghijklmno-checkpoint.ipynb
158.9 kB
figure_s8a.ipynb
168.7 kB
figure_s8cdefghijklmno.ipynb
159.0 kB
parameter_fitting_filtered_fits.pkl
39.5 MB
sensitivity_results_20210713-224808.pkl
28.3 kB
figure_s9
.ipynb_checkpoints
figure_s9abcdefg-checkpoint.ipynb
128.3 kB
figure_s9abcdefg.ipynb
181.1 kB
parameter_fitting_top_fits.pkl
120.5 kB
process_raw_data
.DS_Store
6.1 kB
.ipynb_checkpoints
BMP2_BMP9_matrices_compilation_E001-checkpoint.ipynb
10.3 kB
P_receptor_profiles-checkpoint.ipynb
62.0 kB
RP018_R1bOX_PCandMC_qPCR-checkpoint.ipynb
3.4 MB
RP023_ALK1OX_MC_qPCR-checkpoint.ipynb
3.2 MB
RP045_JML_BMPR2_shRNA_qPCR-checkpoint.ipynb
20.6 kB
RP056_shRNA_ACVR1_BMPR1A_qPCR-checkpoint.ipynb
663.8 kB
RP067_shRNA_ACVR1_BMPR1A_qPCR-checkpoint.ipynb
1.2 MB
parameter_fitting_filter_solutions-checkpoint.ipynb
72.4 kB
parameter_fitting_filter_solutions_old-checkpoint.ipynb
3.3 MB
sample_parameter_fitting_script-checkpoint.ipynb
34.2 kB
BMP2_BMP9_matrices_compilation_E001.ipynb
10.3 kB
BMP2_BMP9_matrices_compiled_data_processed.csv
62.3 kB
H001_d1_gradients.m
3.6 kB
H002_d1_gradients.m
3.6 kB
H003_d1_gradients.m
3.6 kB
P004_robot_all_gradients.m
3.8 kB
P009_robot_all_gradients.m
3.6 kB
P011_robot_all_gradients.m
3.6 kB
P014_es_y7_grads.m
4.1 kB
P016_robot_all_gradients.m
3.6 kB
P020_es_y7_grads.m
4.1 kB
P028_F17_allgrads_manual.m
3.9 kB
P030_es_y7_grads_manual.m
4.6 kB
P038_f17_all_rims.m
4.6 kB
P040_f17_all_rims.m
4.6 kB
P041_f17_all_rims.m
4.3 kB
P044_f17_bmp8a_rims.m
4.6 kB
P046_b6_gradients.m
4.4 kB
P064_d1_some_rims.m
4.8 kB
P065_d1_some_rims.m
4.7 kB
P066_d1_some_rims.m
5.1 kB
P067_d1_some_rims.m
5.1 kB
P070_br2_shrna_2A_grads.m
3.7 kB
P071_br2_shrna_2A_grads.m
3.7 kB
P072_br2_shrna_2A_all_rims.m
4.9 kB
P073_y7_all_rims.m
4.7 kB
P074_br2_shrna_2A_all_rims.m
4.9 kB
P075_y7_all_rims.m
4.7 kB
P076_br2_shrna_2A_all_rims.m
4.9 kB
P077_y7_all_rims.m
4.7 kB
P078_y7_all_rims.m
4.7 kB
P079_robot_all_gradients.m
3.7 kB
P081_br1a_shrna_3c_all_gradients.m
3.7 kB
P082_br1a_shrna_3c_all_rims.m
4.8 kB
P084_br1a_shrna_3c_all_rims.m
4.8 kB
P085_br1a_shrna_3c_all_rims.m
5.4 kB
P087_ar1_shrna_k6_all_gradients.m
3.7 kB
P088_br1a_shrna_3c_some_rims.m
4.3 kB
P091_ar1_shrna_k6_all_gradients.m
3.7 kB
P092_b6_all_rims.m
4.7 kB
P093_b6_all_rims.m
4.7 kB
P094_ar1_shrna_k6_all_rims.m
4.8 kB
P095_ar1_shrna_k6_all_rims.m
4.8 kB
P096_ar1_shrna_k6_all_rims.m
4.8 kB
P098_ar1_shrna_k6_some_matrices.m
13.4 kB
P099_ar1_shrna_k6_some_matrices.m
13.3 kB
P101_b6_all_rims.m
4.7 kB
P_receptor_profiles.ipynb
61.8 kB
RP018_R1bOX_PCandMC_qPCR.ipynb
3.4 MB
RP023_ALK1OX_MC_qPCR.ipynb
3.2 MB
RP045_JML_BMPR2_shRNA_qPCR.ipynb
20.7 kB
RP056_shRNA_ACVR1_BMPR1A_qPCR.ipynb
729.1 kB
RP067_shRNA_ACVR1_BMPR1A_qPCR.ipynb
1.2 MB
bmp_name_wrangle.m
1.8 kB
classify_all_rim_data.m
2.2 kB
parameter_fitting_filter_solutions.ipynb
72.4 kB
parameter_fitting_filter_solutions_old.ipynb
3.2 MB
process_all_gradient_data.m
1.9 kB
process_all_rim_data.m
1.4 kB
process_figures
sample_parameter_fitting_script.ipynb
34.2 kB
processed_qpcr_data
RP018_data_processed.csv
2.7 kB
RP023_data_processed.csv
1.7 kB
RP045_data_processed.csv
7.6 kB
RP056_data_processed.csv
6.4 kB
RP067_data_processed.csv
5.6 kB
rec_qpcr.csv
3.9 kB