Quantitative whole-tissue 3D imaging reveals bacteria in close association with mouse jejunum mucosa

Poceviciute, Roberta; Bogatyrev, Said R.; Romano, Anna E.; Dilmore, Amanda H.; Mondragón-Palomino, Octavio; Takko, Heli; Ismagilov, Rustem F.

doi:10.22002/D1.20199

Published June 16, 2022 | Version 1.0

Dataset Metadata-only

Quantitative whole-tissue 3D imaging reveals bacteria in close association with mouse jejunum mucosa

1. California Institute of Technology

Raw and processed data and imaging files [0.42 TB total] for the bioRxiv preprint "Quantitative whole-tissue 3D imaging reveals bacteria in close association with mouse jejunum mucosa"

Other

Related Publication: Quantitative whole-tissue 3D imaging reveals bacteria in close association with mouse jejunum mucosa bioRxiv eng

External Files

Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/0_D1.20199/

DataSummary.xlsx, 14.7 kB

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Fig01-DataAnalysis-GrowthCurves.zip, 26.0 kB

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Fig01-DataAnalysis-RTqPCR.zip, 893.5 kB

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Fig02-DataAnalysis.zip, 287.5 kB

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Fig03-DataAnalysis.zip, 288.3 MB

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Fig04-Fig06-DataAnalysis.zip, 79.8 MB

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FigS07-DataAnalysis.zip, 316.7 MB

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FigS08-DataAnalysis.zip, 685.2 MB

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FigS09-DataAnalysis.zip, 245.5 MB

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FigS11-DataAnalysis.zip, 164.9 kB

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R4P-p091-20xC-ImarisSurfaceFiles.zip, 4.4 kB

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R4P-p091-D28C3M1-EJ-5x_Stitch.czi, 2.9 GB

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R4P-p091-D29C2M1-EJ-5x_Stitch.czi, 2.6 GB

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R4P-p091-D29C4M2-EJ-1.czi, 7.3 GB

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R4P-p091-D29C4M2-EJ-1.ims, 11.1 GB

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R4P-p091-D29C4M2-EJ-3.czi, 4.6 GB

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R4P-p091-D29C4M2-EJ-3.ims, 8.1 GB

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R4P-p091-D29C4M2-EJ-5x_Stitch.czi, 2.0 GB

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R4P-p091-D31C1M1-EJ-5x_Stitch.czi, 3.4 GB

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R4P-p121-Bfrag-v3EC-v3BAC-20x.czi, 1.5 GB

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R4P-p121-Ecoli-v3EC-v3BAC-20x.czi, 1.5 GB

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R4P-p124-20xC-ImarisSurfaceFiles.zip, 486.2 kB

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R4P-p124-D28C1M1-EJ-5x_Stitch.czi, 1.1 GB

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R4P-p124-D28C2M1-EJ-5x_Stitch.czi, 1.4 GB

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R4P-p124-D28C3M1-EJ-1.czi, 5.3 GB

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R4P-p124-D28C3M1-EJ-1.ims, 7.4 GB

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R4P-p124-D28C3M1-EJ-2.czi, 5.2 GB

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R4P-p124-D28C3M1-EJ-2.ims, 7.6 GB

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R4P-p124-D28C3M1-EJ-3.czi, 4.3 GB

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R4P-p124-D28C3M1-EJ-3.ims, 6.4 GB

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R4P-p124-D28C3M1-EJ-5x_Stitch.czi, 1.1 GB

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R4P-p124-D28C4M1-EJ-1.czi, 4.8 GB

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R4P-p124-D28C4M1-EJ-1.ims, 9.7 GB

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R4P-p124-D28C4M1-EJ-2.czi, 4.8 GB

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R4P-p124-D28C4M1-EJ-2.ims, 7.0 GB

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R4P-p124-D28C4M1-EJ-3.czi, 4.1 GB

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R4P-p124-D28C4M1-EJ-3.ims, 6.6 GB

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R4P-p124-D28C4M1-EJ-4.czi, 5.0 GB

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R4P-p124-D28C4M1-EJ-4.ims, 7.4 GB

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R4P-p124-D28C4M1-EJ-5.czi, 5.7 GB

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R4P-p124-D28C4M1-EJ-5.ims, 8.9 GB

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R4P-p124-D28C4M1-EJ-5x_Stitch.czi, 1.2 GB

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R4P-p124-D28C4M1-EJ-6.czi, 5.4 GB

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R4P-p124-D28C4M1-EJ-7.czi, 5.8 GB

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R4P-p124-D28C4M1-EJ-7.ims, 8.6 GB

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R4P-p124-D29C1M2-EJ-1.czi, 5.8 GB

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R4P-p124-D29C1M2-EJ-1.ims, 8.3 GB

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R4P-p124-D29C1M2-EJ-2.czi, 4.6 GB

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R4P-p124-D29C1M2-EJ-2.ims, 6.6 GB

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R4P-p124-D29C1M2-EJ-3.czi, 4.2 GB

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R4P-p124-D29C1M2-EJ-3.ims, 6.6 GB

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R4P-p124-D29C1M2-EJ-5x_Stitch.czi, 918.4 MB

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R4P-p124-D29C2M2-EJ-1.czi, 6.1 GB

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R4P-p124-D29C2M2-EJ-1.ims, 9.5 GB

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R4P-p124-D29C2M2-EJ-2.czi, 6.0 GB

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R4P-p124-D29C2M2-EJ-2.ims, 8.3 GB

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R4P-p124-D29C2M2-EJ-3.czi, 3.9 GB

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R4P-p124-D29C2M2-EJ-4.czi, 5.5 GB

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R4P-p124-D29C2M2-EJ-4.ims, 7.8 GB

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R4P-p124-D29C2M2-EJ-5x_Stitch.czi, 1.2 GB

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R4P-p124-D29C3M2-EJ-5x_Stitch.czi, 1.3 GB

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R4P-p124-D29C4M2-EJ-5x_Stitch.czi, 1.3 GB

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R4P-p124-D30C1M3-EJ-5x_Stitch.czi, 877.9 MB

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R4P-p124-D30C2M3-EJ-1.czi, 3.9 GB

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R4P-p124-D30C2M3-EJ-1.ims, 5.9 GB

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R4P-p124-D30C2M3-EJ-2.czi, 4.4 GB

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R4P-p124-D30C2M3-EJ-2.ims, 8.1 GB

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R4P-p124-D30C2M3-EJ-3.czi, 4.2 GB

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R4P-p124-D30C2M3-EJ-3.ims, 6.2 GB

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R4P-p124-D30C2M3-EJ-5x_Stitch.czi, 1.2 GB

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R4P-p124-D30C3M3-EJ-5x_Stitch.czi, 1.3 GB

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R4P-p124-D30C4M3-EJ-5x_Stitch.czi, 1.1 GB

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R4P-p124-D31C1M4-EJ-1.czi, 3.7 GB

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R4P-p124-D31C1M4-EJ-1.ims, 5.6 GB

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R4P-p124-D31C1M4-EJ-2.czi, 3.8 GB

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R4P-p124-D31C1M4-EJ-2.ims, 5.6 GB

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R4P-p124-D31C1M4-EJ-3.czi, 6.2 GB

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R4P-p124-D31C1M4-EJ-3.ims, 8.7 GB

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R4P-p124-D31C1M4-EJ-5x_Stitch.czi, 949.5 MB

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R4P-p124-D31C2M4-JE-5x_Stitch.czi, 1.5 GB

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R4P-p124-D31C3M4-EJ-1.czi, 5.3 GB

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R4P-p124-D31C3M4-EJ-1.ims, 7.4 GB

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R4P-p124-D31C3M4-EJ-2.czi, 5.4 GB

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R4P-p124-D31C3M4-EJ-2.ims, 7.8 GB

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R4P-p124-D31C3M4-EJ-3.czi, 4.9 GB

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R4P-p124-D31C3M4-EJ-3.ims, 3.4 GB

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R4P-p124-D31C3M4-EJ-4.czi, 5.3 GB

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R4P-p124-D31C3M4-EJ-5x_Stitch.czi, 1.1 GB

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R4P-p124-D31C4M4-EJ-1.czi, 5.3 GB

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R4P-p124-D31C4M4-EJ-1.ims, 2.9 GB

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R4P-p124-D31C4M4-EJ-2.czi, 4.8 GB

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R4P-p124-D31C4M4-EJ-2.ims, 6.9 GB

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R4P-p124-D31C4M4-EJ-3.czi, 5.6 GB

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R4P-p124-D31C4M4-EJ-4.czi, 5.8 GB

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R4P-p124-D31C4M4-EJ-4.ims, 8.1 GB

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R4P-p124-D31C4M4-EJ-5x_Stitch.czi, 1.5 GB

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R4P-p125-D31C4M4-CD455-WGA2-Crop.ims, 371.2 MB

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R4P-p125-D31C4M4-CD455-WGA2.czi, 4.2 GB

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R4P-p125-D31C4M4-CD455-WGA2.ims, 1.9 GB

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R4P-p125-D31C4M4-EpCAM5-WGA2-Crop.ims, 810.8 MB

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R4P-p125-D31C4M4-EpCAM5-WGA2.czi, 4.6 GB

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R4P-p125-D31C4M4-EpCAM5-WGA2.ims, 2.3 GB

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R4P-p127-20xCS-ImarisSurfaceFiles.zip, 3.3 kB

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R4P-p127-D28C4M1-EJ-20xCS-1.czi, 8.4 GB

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R4P-p127-D28C4M1-EJ-20xCS-1_Linear unmixing.czi, 1.3 GB

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R4P-p127-D28C4M1-EJ-20xCS-1_Linear unmixing.ims, 869.6 MB

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R4P-p127-D28C4M1-EJ-20xCS-2.czi, 8.2 GB

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R4P-p127-D28C4M1-EJ-20xCS-2_Linear unmixing.czi, 1.3 GB

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R4P-p127-D28C4M1-EJ-20xCS-2_Linear unmixing.ims, 824.7 MB

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R7P-p008-A4B8P0-A1B.01P4.czi, 651.1 MB

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R7P-p008-A4B8P0-A4B0P4.czi, 789.7 MB

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R7P-p040-Ecoli-CFB560bV2-BacteroidesV3-20x.czi, 1.1 GB

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R7P-p041-EUB338v2-UNIVv3-1.czi, 1.6 GB

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R7P-p041-EUB338v2-UNIVv3-2.czi, 1.2 GB

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Additional details

DOI: 10.22002/D1.20199
CALTECHDATA_ID: 20199

Kenneth Rainin Foundation
:unav 2018-1207 (to RFI)
Army Research Office Multidisciplinary University Research Initiative
:unav W911NF-17-1-0402 (to RFI)
Defense Advanced Research Projects Agency
:unav HR0011-17-2-0037 (to RFI)
Jacobs Institute for Molecular Engineering for Medicine
:unav n/a (to RFI)
Burroughs Welcome Fund Career Award at the Scientific Interface
:unav ID# 106969 (to OMP)

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Quantitative whole-tissue 3D imaging reveals bacteria in close association with mouse jejunum mucosa

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Quantitative whole-tissue 3D imaging reveals bacteria in close association with mouse jejunum mucosa

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