Published August 4, 2019 | Version 1.0
Dataset Open

Analysis of the number of zeros in scRNA-seq data

Svensson, Valentine1 ORCID icon
  • 1. ROR icon California Institute of Technology

Description

This contains several scRNA-seq datasets in H5AD format and notebook for generating analysis results and figures regarding the number of zeros in scRNA-seq data.

Files

Gene-wise dispersion.ipynb
Files (340.6 MB)
Name Size
Svensson et al 2017 (1).h5ad
md5:67f12e777d76a67ba197297b2d76db91
12.9 MB Download
Gene-wise dispersion.ipynb
md5:41e42d50ff8280be5abdf1b9f415a9fc
8.8 kB Preview Download
Klein et al 2015.h5ad
md5:d10af6e24c6c4256399af85c1c1c7fb3
76.9 MB Download
10x v3 HEK293T.h5ad
md5:584627f31dad8b834ca912199edc5178
115.7 MB Download
Poisson.ipynb
md5:ea16af9a08d6a8f1085d85a9c09e81c0
13.7 kB Preview Download
10x v3 NIH3T3.h5ad
md5:f6da568a7406af508894f42bf49ac74a
87.6 MB Download
10x v3 PBMC.h5ad
md5:ff6558b14582623da0baa111ecd8d80d
25.5 MB Download
Svensson et al 2017 (2).h5ad
md5:e945b0a45245987e7f8d54f93b28df37
12.1 MB Download
Macosko et al 2015.h5ad
md5:de95052ca592d1308ea8beecf633dba9
62.3 kB Download
Make Poisson plot.ipynb
md5:23696bd196e796e1229bd0b2e71cc333
451.1 kB Preview Download
Zheng et al 2017.h5ad
md5:2eef08e0c9abde02de3694a32bfdaf44
482.9 kB Download
Make SMARTer plot.ipynb
md5:1abd90386dba89984b8a0e1480af0b69
146.2 kB Preview Download
Make plot.ipynb
md5:d8c66803f8b065e6cf463de3a629ea46
628.2 kB Preview Download
Make result stats.ipynb
md5:ccf2db883d17c0fe6b4543f010ef0440
4.6 kB Preview Download
Padovan-Merhar et al 2015 (SMARTer).h5ad
md5:4134f9df0e43c55291a4f3567b7f5c0c
8.1 MB Download

Additional details

Identifiers Related works
Created:
September 8, 2022
Modified:
November 18, 2022