Published 2017 | Version v1
Dataset Open

Coxiella_ Verocells_28dpi

  • 1. ROR icon California Institute of Technology

Description

Coxiella burnetii Nine Mile phase II clone 4 (NMIIC4) strain. Coxiella cells purified from infected Vero cells.

Technical info

Tilt Series Date: 2017-09-25

Data Taken By: Debnath Ghosal

Species / Specimen: Coxiella burnetii

Strain: Nine Mile phase II clone 4

Tilt Series Settings: Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Ų, defocus: -7.0 μm, magnification: 27500x.

Microscope: Caltech Polara

Acquisition Software: UCSFTomo

Upload Method: pipeline

Processing Software Used: Raptor

Collaborators and Roles: Strain sent to us by Robert Heinzen. Data collected and processed by Debnath Ghosal using Caltech tomography pipeline.

Purification / Growth Conditions / Treatment: Refer to Heinzen lab.

Sample Preparation: Freezing: 100% humidity, 4µl sample, Blot force 6, blot time 4 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.T

dga2017-09-25-106_slicer19029.jpg: A flat structure on the outside surface of the cell dga2017-09-25-106_slicer19030.jpg: A flat structure on the outside surface of the cell dga2017-09-25-106_slicer19031.jpg: multilayer structure beneath the inner membrane dga2017-09-25-106_slicer19058.jpg: endstage cell division

Attached Files

Cb_vero_201709250106.mrc, Tilt Series (Pixel Size 0.39 nm), 1.7 GB

Cb_vero_201709250106_part61_4.rec, Reconstruction (Pixel Size 1.56 nm), 445.4 MB

Files

dga2017-09-25-106_slicer19029.jpg

Files (2.2 GB)

Name Size
1.7 GB (external) Download
445.4 MB (external) Download
md5:62eb3609c3478c68ea4b3355ba241c48
424.1 kB Preview Download
md5:93a735466971f88eeed58ec7dadb756a
330.4 kB Preview Download
md5:049543c0907e0ecc18afa0d1ab8aaffb
330.4 kB Preview Download
md5:56b7084ef84769e907928ddc4da684b5
296.1 kB Preview Download
md5:8b2005fff750bcac9123817aa4ad8bca
1.1 MB Preview Download
md5:5ab6121433f10c0192da4f85d4f0f345
15.0 MB Preview Download

Additional details

Identifiers

DOI
10.22002/7gyr5-3p045
TILT_SERIES_ID
dga2017-09-25-106

Funding

NIH
HHMI
Beckman Institute
Gordon and Betty Moore Foundation
Agouron Institute
John Templeton Foundation

Dates

Collected
2017-09-25
Created
2017-09-27
Updated
2017-11-18