Published 2017 | Version v1
Dataset Open

Coxiella_burnetii_ wtACCMD_pH4d5

  • 1. ROR icon California Institute of Technology

Description

Coxiella burnetii Nine Mile phase II clone 4 (NMIIC4) strain. Wild-type cells day-5 culture. Cells grown in acidic media ACCMD and pH 4.75

Technical info

Tilt Series Date: 2017-08-15

Data Taken By: Debnath Ghosal

Species / Specimen: Coxiella burnetii

Strain: Nine Mile phase II clone 4

Tilt Series Settings: Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Ų, defocus: -7.0 μm, magnification: 27500x.

Microscope: Caltech Polara

Acquisition Software: UCSFTomo

Upload Method: pipeline

Processing Software Used: Raptor

Collaborators and Roles: Strain sent to us by Robert Heinzen. Data collected and processed by Debnath Ghosal using Caltech tomography pipeline.

Purification / Growth Conditions / Treatment: Cells were grown in Robert Heinzen's lab @NIAID and ~50 ul cells were sent to us.

Sample Preparation: Refer to Heinzen lab. Freezing: 100% humidity, 4µl sample, Blot force 6, blot time 4 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.

dga2017-08-15-74_slicer18791.jpg: cytoplasmic filaments dga2017-08-15-74_slicer18792.jpg: cytoplasmic filaments??? dga2017-08-15-74_slicer18793.jpg: buldging vesicle from the outer membrane dga2017-08-15-74_slicer18794.jpg: periplasmic vesicle from the inner membrane dga2017-08-15-74_slicer18795.jpg: cytoplasmic vesicle dga2017-08-15-74_slicer18796.jpg: extracellular vesicle dga2017-08-15-74_slicer18797.jpg: double membrane cytoplasmic vesicle vesicle

Attached Files

Cb_20170817_Cb1pH4d5p0003.mrc, Tilt Series (Pixel Size 0.39 nm), 1.7 GB

Cb_20170817_Cb1pH4d5p0003_part61_15.rec, Reconstruction (Pixel Size 1.56 nm), 445.4 MB

Files

dga2017-08-15-74_slicer18791.jpg

Files (2.2 GB)

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445.4 MB (external) Download
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Additional details

Identifiers

DOI
10.22002/7qk11-5g706
TILT_SERIES_ID
dga2017-08-15-74

Funding

NIH
HHMI
Beckman Institute
Gordon and Betty Moore Foundation
Agouron Institute
John Templeton Foundation

Dates

Collected
2017-08-15
Created
2017-08-18
Updated
2017-10-09