The file main_muscle_and_wing_data.h5 contains the time series of muscle activity and wing kinematics required to train the muscle-to-wing motion CNN and the encoder-decoder used in the latent variable analysis. The archive flynet_data.zip contains data files for training the FlyNet CNN and running FlyNet application. Archive contents: camera => folder containing example camera calibration movies => example high speed video sequence training => labeled training data for FlyNet CNN The robofly_data.zip archive contains the MATLAB data files with force and torque data acquired using the dynamically scaled robotic fly. The code required to perform the analysis in the paper and reconstruct all of the data figures are available at the following URL: https://github.com/FlyRanch/mscode-melis-siwanowicz-dickinson