capblood_seq_processed.zip
capblood_seq_processed
AM1
barcode_transcript_counts.sdt
214.1 MB
cell_transcript_counts_cellranger_filtered.sdt
65.2 MB
cell_transcript_counts_debris_filtered.sdt
51.2 MB
cell_transcript_counts_normalized.sdt
48.2 MB
cell_transcript_counts_visualization.sdt
48.2 MB
normalized_normalized.sdt
120.2 MB
normalized_visualization.sdt
120.2 MB
transformed_NMF_visualization.csv
2.1 MB
transformed_PCA_visualization.csv
2.0 MB
transformed_SVD_visualization.csv
2.0 MB
transformed_TSNE_visualization.csv
124.7 kB
AM2
barcode_transcript_counts.sdt
277.3 MB
cell_transcript_counts_cellranger_filtered.sdt
112.8 MB
cell_transcript_counts_debris_filtered.sdt
102.4 MB
cell_transcript_counts_normalized.sdt
98.4 MB
cell_transcript_counts_visualization.sdt
98.4 MB
normalized_normalized.sdt
245.4 MB
normalized_visualization.sdt
245.4 MB
transformed_NMF_visualization.csv
4.4 MB
transformed_PCA_visualization.csv
4.2 MB
transformed_SVD_visualization.csv
4.2 MB
transformed_TSNE_visualization.csv
265.4 kB
AM3
barcode_transcript_counts.sdt
221.6 MB
cell_transcript_counts_cellranger_filtered.sdt
92.2 MB
cell_transcript_counts_debris_filtered.sdt
85.2 MB
cell_transcript_counts_normalized.sdt
81.2 MB
cell_transcript_counts_visualization.sdt
81.2 MB
normalized_normalized.sdt
202.7 MB
normalized_visualization.sdt
202.7 MB
transformed_NMF_visualization.csv
3.4 MB
transformed_PCA_visualization.csv
3.3 MB
transformed_SVD_visualization.csv
3.3 MB
transformed_TSNE_visualization.csv
208.0 kB
Dobreva2020
differential_expression.xlsx
13.6 MB
dobreva2020_nepoch_50_lr_1.0e-03_latent.pickle
1.0 MB
dobreva2020_nepoch_50_lr_1.0e-03_weights.pickle
46.0 MB
Hashimoto2019
hashimoto2019_nepoch_50_lr_1.0e-03_latent.pickle
799.9 kB
hashimoto2019_nepoch_50_lr_1.0e-03_weights.pickle
60.3 MB
labels.csv
763.2 kB
Hashimoto2019_cell_type_percentages.csv
381 Bytes
Hu2019
hu2019_nepoch_50_lr_1.0e-03_latent.pickle
385.8 kB
hu2019_nepoch_50_lr_1.0e-03_weights.pickle
86.8 MB
labels.csv
346.1 kB
Hu2019_cell_type_percentages.csv
198 Bytes
Lee2020
labels.csv
798.7 kB
lee2020_nepoch_50_lr_1.0e-03_latent.pickle
988.1 kB
lee2020_nepoch_50_lr_1.0e-03_weights.pickle
86.4 MB
Lee2020_cell_type_percentages.csv
314 Bytes
PM1
barcode_transcript_counts.sdt
163.9 MB
cell_transcript_counts_cellranger_filtered.sdt
37.1 MB
cell_transcript_counts_debris_filtered.sdt
30.0 MB
cell_transcript_counts_normalized.sdt
27.7 MB
cell_transcript_counts_visualization.sdt
27.7 MB
normalized_normalized.sdt
69.0 MB
normalized_visualization.sdt
69.0 MB
transformed_NMF_visualization.csv
1.2 MB
transformed_PCA_visualization.csv
1.1 MB
transformed_SVD_visualization.csv
1.1 MB
transformed_TSNE_visualization.csv
72.8 kB
PM2
barcode_transcript_counts.sdt
223.9 MB
cell_transcript_counts_cellranger_filtered.sdt
59.5 MB
cell_transcript_counts_debris_filtered.sdt
42.5 MB
cell_transcript_counts_normalized.sdt
39.5 MB
cell_transcript_counts_visualization.sdt
39.5 MB
labels_demuxlet.csv
7.1 MB
normalized_normalized.sdt
98.4 MB
normalized_visualization.sdt
98.4 MB
transformed_NMF_visualization.csv
1.7 MB
transformed_PCA_visualization.csv
1.6 MB
transformed_SVD_visualization.csv
1.6 MB
transformed_TSNE_visualization.csv
101.7 kB
PM3
barcode_transcript_counts.sdt
263.6 MB
cell_transcript_counts_cellranger_filtered.sdt
102.4 MB
cell_transcript_counts_debris_filtered.sdt
91.4 MB
cell_transcript_counts_normalized.sdt
87.3 MB
cell_transcript_counts_visualization.sdt
87.3 MB
normalized_normalized.sdt
217.9 MB
normalized_visualization.sdt
217.9 MB
transformed_NMF_visualization.csv
3.6 MB
transformed_PCA_visualization.csv
3.5 MB
transformed_SVD_visualization.csv
3.5 MB
transformed_TSNE_visualization.csv
220.3 kB
VenousVsCapillary
differential_expression.xlsx
16.2 MB
nepoch_50_lr_1.0e-03_clusters.pickle
636.9 kB
nepoch_50_lr_1.0e-03_latent.pickle
3.2 MB
nepoch_50_lr_1.0e-03_tsne.pickle
636.9 kB
nepoch_50_lr_1.0e-03_weights.pickle
43.9 MB
capillary_cell_type_percentages.csv
1.5 kB
debris_filtering_statistics.csv
223 Bytes
diurnal_genes_corrected_p_values.csv
716.8 kB
gene_diurnality.csv
737.0 kB
gene_individuality.csv
174.9 kB
sig_genes.csv
4.0 kB
subject_cell_type_significance_counts.csv
119 Bytes