Preview

MEM_Submission_ExtendedData
- .DS_Store
  
  6.1 kB
- .ipynb_checkpoints
- ED_1
  - .DS_Store
    
    6.1 kB
  - .ipynb_checkpoints
    - ED1-checkpoint.ipynb
      
      87.4 kB
  - ED1.ipynb
    
    87.4 kB
  - Figures
    - long_biopsy_load_reads_scatter.pdf
      
      23.5 kB
    - long_biopsy_load_reads_scatter.png
      
      33.6 kB
    - long_biopsy_read_counts.pdf
      
      19.6 kB
    - long_biopsy_read_counts.png
      
      20.3 kB
  - Processed_Data
    - .ipynb_checkpoints
    - NovaSeq_MetaData_20210813.xlsx
      
      33.9 kB
    - long_biopsies_loads.pkl
      
      11.2 kB
- ED_2
  - .ipynb_checkpoints
    - ED_2-checkpoint.ipynb
      
      75.6 kB
  - ED_2.ipynb
    
    75.6 kB
  - Figures
    - long_biopsy_load.pdf
      
      28.8 kB
    - long_biopsy_load.png
      
      46.2 kB
  - Processed_Data
    - long_biopsies_loads.pkl
      
      11.2 kB
- ED_3
  - .DS_Store
    
    6.1 kB
  - .ipynb_checkpoints
    - ED_3-checkpoint.ipynb
      
      305.6 kB
  - ED_3.ipynb
    
    305.6 kB
  - Figures
    - Fig_ED3_A.pdf
      
      17.9 kB
    - Fig_ED3_A.png
      
      37.7 kB
    - Fig_ED3_B.pdf
      
      18.9 kB
    - Fig_ED3_B.png
      
      36.5 kB
    - Fig_ED3_C.pdf
      
      17.1 kB
    - Fig_ED3_C.png
      
      38.2 kB
    - Fig_ED3_D.pdf
      
      17.1 kB
    - Fig_ED3_D.png
      
      36.5 kB
  - Processed_Data
    - longitudinal_genefam_normalized.tsv
      
      162.3 MB
    - longitudinal_pathabund_norm.tsv
      
      1.2 MB
    - longitudinal_pathway_coverage.tsv
      
      3.3 MB
- ED_4
  - .DS_Store
    
    6.1 kB
  - .ipynb_checkpoints
    - ED_4-checkpoint.ipynb
      
      39.0 kB
  - ED_4.ipynb
    
    39.0 kB
  - Figures
    - Fig_ED4A.pdf
      
      34.5 kB
    - Fig_ED4A.png
      
      23.2 kB
    - SI_Methano_smithii.png
      
      972.2 kB
  - Processed_Data
    - .ipynb_checkpoints
      - biopsy_merged_abundance-checkpoint.csv
        
        132.4 kB
    - biopsy_merged_abundance.csv
      
      132.4 kB
- ED_5
  - .ipynb_checkpoints
    - ED_5-checkpoint.ipynb
      
      44.0 kB
  - ED_5.ipynb
    
    44.0 kB
  - Figures
    - R_bromii_AA.pdf
      
      10.9 kB
    - R_bromii_AA.png
      
      9.6 kB
    - R_bromii_SCV.pdf
      
      10.9 kB
    - R_bromii_SCV.png
      
      9.8 kB
    - R_bromii_SNPs.pdf
      
      10.9 kB
    - R_bromii_SNPs.png
      
      9.8 kB
  - Processed_Data
    - FI_rbromii_50X_21_AA.txt
      
      747 Bytes
    - FI_rbromii_50X_21_SCV.txt
      
      735 Bytes
    - FI_rbromii_50X_21_genesubset.txt
      
      743 Bytes
- README.md
  
  803 Bytes
- Versions.ipynb
  
  3.8 kB
__MACOSX
- MEM_Submission_ExtendedData
  - ._.DS_Store
    
    120 Bytes
  - ._README.md
    
    176 Bytes
  - ED_1
    - ._.DS_Store
      
      120 Bytes
    - Figures
      - ._long_biopsy_load_reads_scatter.png
        
        233 Bytes
      - ._long_biopsy_read_counts.png
        
        176 Bytes
  - ED_3
    - ._.DS_Store
      
      120 Bytes
  - ED_4
    - ._.DS_Store
      
      120 Bytes
    - Figures
      - ._SI_Methano_smithii.png
        
        220 Bytes

MEM_ExtendedData.zip