Sequencing and Analysis for Figure 3.zip
.ipynb_checkpoints
Untitled-checkpoint.ipynb
72 Bytes
BatchBismark2.sh
827 Bytes
Genome
.DS_Store
10.2 kB
._.DS_Store
4.1 kB
vYM004
.DS_Store
6.1 kB
._.DS_Store
4.1 kB
._vym004_pneo_phic31_trenocpg_pef1s_citrine-1943-4438.fasta
4.1 kB
Bisulfite_Genome
CT_conversion
BS_CT.1.bt2
4.2 MB
BS_CT.2.bt2
632 Bytes
BS_CT.3.bt2
17 Bytes
BS_CT.4.bt2
624 Bytes
BS_CT.rev.1.bt2
4.2 MB
BS_CT.rev.2.bt2
632 Bytes
genome_mfa.CT_conversion.fa
2.6 kB
GA_conversion
BS_GA.1.bt2
4.2 MB
BS_GA.2.bt2
632 Bytes
BS_GA.3.bt2
17 Bytes
BS_GA.4.bt2
624 Bytes
BS_GA.rev.1.bt2
4.2 MB
BS_GA.rev.2.bt2
632 Bytes
genome_mfa.GA_conversion.fa
2.6 kB
vym004_pneo_phic31_trenocpg_pef1s_citrine-1943-4438.fasta
2.6 kB
vym004_pneo_phic31_trenocpg_pef1s_citrine-1943-4438.fasta.fai
58 Bytes
vYM013
.DS_Store
6.1 kB
._.DS_Store
4.1 kB
._vym013_phic31-ntre-insmax-pef1s-h2b-citrine-2626-5431.fasta
4.1 kB
Bisulfite_Genome
CT_conversion
BS_CT.1.bt2
4.2 MB
BS_CT.2.bt2
708 Bytes
BS_CT.3.bt2
17 Bytes
BS_CT.4.bt2
702 Bytes
BS_CT.rev.1.bt2
4.2 MB
BS_CT.rev.2.bt2
708 Bytes
genome_mfa.CT_conversion.fa
2.9 kB
GA_conversion
BS_GA.1.bt2
4.2 MB
BS_GA.2.bt2
708 Bytes
BS_GA.3.bt2
17 Bytes
BS_GA.4.bt2
702 Bytes
BS_GA.rev.1.bt2
4.2 MB
BS_GA.rev.2.bt2
708 Bytes
genome_mfa.GA_conversion.fa
2.9 kB
vym013_phic31-ntre-insmax-pef1s-h2b-citrine-2626-5431.fasta
2.9 kB
vym013_phic31-ntre-insmax-pef1s-h2b-citrine-2626-5431.fasta.fai
58 Bytes
vYM015
._vym015_phic31-ntre-insmin-pef1s-h2b-citrine-2626-5431.fasta
4.1 kB
Bisulfite_Genome
CT_conversion
BS_CT.1.bt2
4.2 MB
BS_CT.2.bt2
708 Bytes
BS_CT.3.bt2
17 Bytes
BS_CT.4.bt2
702 Bytes
BS_CT.rev.1.bt2
4.2 MB
BS_CT.rev.2.bt2
708 Bytes
genome_mfa.CT_conversion.fa
2.9 kB
GA_conversion
BS_GA.1.bt2
4.2 MB
BS_GA.2.bt2
708 Bytes
BS_GA.3.bt2
17 Bytes
BS_GA.4.bt2
702 Bytes
BS_GA.rev.1.bt2
4.2 MB
BS_GA.rev.2.bt2
708 Bytes
genome_mfa.GA_conversion.fa
2.9 kB
vym015_phic31-ntre-insmin-pef1s-h2b-citrine-2626-5431.fasta
2.9 kB
vym015_phic31-ntre-insmin-pef1s-h2b-citrine-2626-5431.fasta.fai
58 Bytes
Jun Methylation Notes.pdf
4.1 MB
Naming File.xlsx
11.9 kB
Python Codes
.ipynb_checkpoints
GetPara_2.0-checkpoint.ipynb
190.2 kB
GetPara_2.0_CallMagicCpG-checkpoint.ipynb
150.7 kB
MethylDistribution-checkpoint.ipynb
1.2 MB
PlotLengthDist-checkpoint.ipynb
761.9 kB
GetPara_2.0.ipynb
698.4 kB
GetPara_2.0_CallMagicCpG.ipynb
150.1 kB
MethylDistribution.ipynb
1.2 MB
MutualInfo_2.2.ipynb
242.0 kB
PlotLengthDist.ipynb
761.9 kB
Reads
.DS_Store
14.3 kB
20190621
.DS_Store
18.4 kB
.ipynb_checkpoints
BismarkCallAna-checkpoint.ipynb
149.5 kB
BismarkCallAna.ipynb
149.5 kB
CpG_call
CpG_OT_D13_S13_L001_pe.nonCG_filtered.txt
25.8 MB
CpG_OT_D14_S14_L001_pe.nonCG_filtered.txt
32.3 MB
CpG_OT_D15_S15_L001_pe.nonCG_filtered.txt
28.6 MB
CpG_OT_D16_S16_L001_pe.nonCG_filtered.txt
14.1 MB
CpG_OT_D17_S17_L001_pe.nonCG_filtered.txt
19.0 MB
CpG_OT_D18_S18_L001_pe.nonCG_filtered.txt
19.1 MB
CpG_OT_D19_S19_L001_pe.nonCG_filtered.txt
13.3 MB
D13_S13_L001_PE_report.txt
1.8 kB
D13_S13_L001_R1_001.fastq
11.9 MB
D13_S13_L001_R2_001.fastq
11.9 MB
D13_S13_L001_pe.bam
1.7 MB
D13_S13_L001_pe.non-conversion_filtering.txt
251 Bytes
D13_S13_L001_pe.nonCG_filtered.M-bias.txt
14.0 kB
D13_S13_L001_pe.nonCG_filtered.bam
1.7 MB
D13_S13_L001_pe.nonCG_filtered.sorted.bam
941.3 kB
D13_S13_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D13_S13_L001_pe.nonCG_filtered_splitting_report.txt
886 Bytes
D14_S14_L001_PE_report.txt
1.8 kB
D14_S14_L001_R1_001.fastq
17.0 MB
D14_S14_L001_R2_001.fastq
17.0 MB
D14_S14_L001_pe.bam
2.5 MB
D14_S14_L001_pe.non-conversion_filtering.txt
252 Bytes
D14_S14_L001_pe.nonCG_filtered.M-bias.txt
15.0 kB
D14_S14_L001_pe.nonCG_filtered.bam
2.5 MB
D14_S14_L001_pe.nonCG_filtered.sorted.bam
1.3 MB
D14_S14_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D14_S14_L001_pe.nonCG_filtered_splitting_report.txt
891 Bytes
D15_S15_L001_PE_report.txt
1.8 kB
D15_S15_L001_R1_001.fastq
14.8 MB
D15_S15_L001_R2_001.fastq
14.8 MB
D15_S15_L001_pe.bam
2.6 MB
D15_S15_L001_pe.non-conversion_filtering.txt
252 Bytes
D15_S15_L001_pe.nonCG_filtered.M-bias.txt
14.9 kB
D15_S15_L001_pe.nonCG_filtered.bam
2.5 MB
D15_S15_L001_pe.nonCG_filtered.sorted.bam
1.4 MB
D15_S15_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D15_S15_L001_pe.nonCG_filtered_splitting_report.txt
892 Bytes
D16_S16_L001_PE_report.txt
1.8 kB
D16_S16_L001_R1_001.fastq
8.1 MB
D16_S16_L001_R2_001.fastq
8.1 MB
D16_S16_L001_pe.bam
1.3 MB
D16_S16_L001_pe.non-conversion_filtering.txt
251 Bytes
D16_S16_L001_pe.nonCG_filtered.M-bias.txt
14.5 kB
D16_S16_L001_pe.nonCG_filtered.bam
1.3 MB
D16_S16_L001_pe.nonCG_filtered.sorted.bam
738.8 kB
D16_S16_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D16_S16_L001_pe.nonCG_filtered_splitting_report.txt
888 Bytes
D17_S17_L001_PE_report.txt
1.8 kB
D17_S17_L001_R1_001.fastq
12.1 MB
D17_S17_L001_R2_001.fastq
12.1 MB
D17_S17_L001_pe.bam
1.9 MB
D17_S17_L001_pe.non-conversion_filtering.txt
251 Bytes
D17_S17_L001_pe.nonCG_filtered.M-bias.txt
14.6 kB
D17_S17_L001_pe.nonCG_filtered.bam
1.9 MB
D17_S17_L001_pe.nonCG_filtered.sorted.bam
1.1 MB
D17_S17_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D17_S17_L001_pe.nonCG_filtered_splitting_report.txt
889 Bytes
D18_S18_L001_PE_report.txt
1.8 kB
D18_S18_L001_R1_001.fastq
9.3 MB
D18_S18_L001_R2_001.fastq
9.3 MB
D18_S18_L001_pe.bam
1.5 MB
D18_S18_L001_pe.non-conversion_filtering.txt
251 Bytes
D18_S18_L001_pe.nonCG_filtered.M-bias.txt
14.2 kB
D18_S18_L001_pe.nonCG_filtered.bam
1.5 MB
D18_S18_L001_pe.nonCG_filtered.sorted.bam
891.9 kB
D18_S18_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D18_S18_L001_pe.nonCG_filtered_splitting_report.txt
888 Bytes
D19_S19_L001_PE_report.txt
1.8 kB
D19_S19_L001_R1_001.fastq
6.4 MB
D19_S19_L001_R2_001.fastq
6.4 MB
D19_S19_L001_pe.bam
955.2 kB
D19_S19_L001_pe.non-conversion_filtering.txt
251 Bytes
D19_S19_L001_pe.nonCG_filtered.M-bias.txt
13.7 kB
D19_S19_L001_pe.nonCG_filtered.bam
943.1 kB
D19_S19_L001_pe.nonCG_filtered.sorted.bam
531.9 kB
D19_S19_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D19_S19_L001_pe.nonCG_filtered_splitting_report.txt
883 Bytes
Running.txt
6.6 kB
bamFile.csv
15.8 MB
20190711
.DS_Store
47.1 kB
CHG_OB_D10_S10_L001_pe.nonCG_filtered.txt
471 Bytes
CHG_OB_D11_S11_L001_pe.nonCG_filtered.txt
469 Bytes
CHH_OB_D07_S7_L001_pe.nonCG_filtered.txt
151 Bytes
CHH_OB_D10_S10_L001_pe.nonCG_filtered.txt
1.0 kB
CHH_OB_D11_S11_L001_pe.nonCG_filtered.txt
895 Bytes
CpG_OB_D07_S7_L001_pe.nonCG_filtered.txt
1.3 kB
CpG_OB_D10_S10_L001_pe.nonCG_filtered.txt
17.7 kB
CpG_OB_D11_S11_L001_pe.nonCG_filtered.txt
16.3 kB
CpG_call
CpG_OT_D01_S1_L001_pe.nonCG_filtered.txt
138.0 kB
CpG_OT_D02_S2_L001_pe.nonCG_filtered.txt
13.0 MB
CpG_OT_D03_S3_L001_pe.nonCG_filtered.txt
26.4 MB
CpG_OT_D04_S4_L001_pe.nonCG_filtered.txt
21.0 MB
CpG_OT_D05_S5_L001_pe.nonCG_filtered.txt
33.8 MB
CpG_OT_D06_S6_L001_pe.nonCG_filtered.txt
366.4 kB
CpG_OT_D07_S7_L001_pe.nonCG_filtered.txt
23.5 MB
CpG_OT_D08_S8_L001_pe.nonCG_filtered.txt
610.4 kB
CpG_OT_D09_S9_L001_pe.nonCG_filtered.txt
2.3 MB
CpG_OT_D10_S10_L001_pe.nonCG_filtered.txt
29.9 MB
CpG_OT_D11_S11_L001_pe.nonCG_filtered.txt
51.5 MB
CpG_OT_D12_S12_L001_pe.nonCG_filtered.txt
49.1 MB
CpG_OT_D13_S13_L001_pe.nonCG_filtered.txt
24.9 MB
CpG_OT_D14_S14_L001_pe.nonCG_filtered.txt
24.5 MB
CpG_OT_D15_S15_L001_pe.nonCG_filtered.txt
30.1 MB
CpG_OT_D16_S16_L001_pe.nonCG_filtered.txt
14.0 MB
CpG_OT_D17_S17_L001_pe.nonCG_filtered.txt
27.9 MB
CpG_OT_D18_S18_L001_pe.nonCG_filtered.txt
38.8 MB
CpG_OT_D19_S19_L001_pe.nonCG_filtered.txt
23.6 MB
CpG_OT_D20_S20_L001_pe.nonCG_filtered.txt
26.8 MB
CpG_OT_D21_S21_L001_pe.nonCG_filtered.txt
20.6 MB
CpG_OT_D22_S22_L001_pe.nonCG_filtered.txt
26.5 MB
CpG_OT_D23_S23_L001_pe.nonCG_filtered.txt
23.5 MB
CpG_OT_D24_S24_L001_pe.nonCG_filtered.txt
20.2 MB
test.txt
1.4 kB
D01_S1_L001_PE_report.txt
1.9 kB
D01_S1_L001_R1_001.fastq
119.9 kB
D01_S1_L001_R1_001.fastq_trimming_report.txt
2.5 kB
D01_S1_L001_R1_001_val_1.fq
56.2 kB
D01_S1_L001_R2_001.fastq
119.9 kB
D01_S1_L001_R2_001.fastq_trimming_report.txt
2.6 kB
D01_S1_L001_R2_001_val_2.fq
56.1 kB
D01_S1_L001_pe.bam
16.7 kB
D01_S1_L001_pe.non-conversion_filtering.txt
247 Bytes
D01_S1_L001_pe.nonCG_filtered.M-bias.txt
15.6 kB
D01_S1_L001_pe.nonCG_filtered.bam
16.7 kB
D01_S1_L001_pe.nonCG_filtered.sorted.bam
15.1 kB
D01_S1_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D01_S1_L001_pe.nonCG_filtered_splitting_report.txt
806 Bytes
D02_S2_L001_PE_report.txt
1.8 kB
D02_S2_L001_R1_001.fastq
10.2 MB
D02_S2_L001_R1_001.fastq_trimming_report.txt
5.2 kB
D02_S2_L001_R1_001_val_1.fq
5.0 MB
D02_S2_L001_R2_001.fastq
10.2 MB
D02_S2_L001_R2_001.fastq_trimming_report.txt
5.4 kB
D02_S2_L001_R2_001_val_2.fq
5.0 MB
D02_S2_L001_pe.bam
1.4 MB
D02_S2_L001_pe.non-conversion_filtering.txt
250 Bytes
D02_S2_L001_pe.nonCG_filtered.M-bias.txt
25.5 kB
D02_S2_L001_pe.nonCG_filtered.bam
1.4 MB
D02_S2_L001_pe.nonCG_filtered.sorted.bam
998.8 kB
D02_S2_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D02_S2_L001_pe.nonCG_filtered_splitting_report.txt
821 Bytes
D03_S3_L001_PE_report.txt
1.8 kB
D03_S3_L001_R1_001.fastq
22.2 MB
D03_S3_L001_R1_001.fastq_trimming_report.txt
5.4 kB
D03_S3_L001_R1_001_val_1.fq
10.1 MB
D03_S3_L001_R2_001.fastq
22.2 MB
D03_S3_L001_R2_001.fastq_trimming_report.txt
5.5 kB
D03_S3_L001_R2_001_val_2.fq
10.1 MB
D03_S3_L001_pe.bam
3.0 MB
D03_S3_L001_pe.non-conversion_filtering.txt
250 Bytes
D03_S3_L001_pe.nonCG_filtered.M-bias.txt
26.9 kB
D03_S3_L001_pe.nonCG_filtered.bam
3.0 MB
D03_S3_L001_pe.nonCG_filtered.sorted.bam
2.2 MB
D03_S3_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D03_S3_L001_pe.nonCG_filtered_splitting_report.txt
827 Bytes
D04_S4_L001_PE_report.txt
1.8 kB
D04_S4_L001_R1_001.fastq
15.5 MB
D04_S4_L001_R1_001.fastq_trimming_report.txt
5.3 kB
D04_S4_L001_R1_001_val_1.fq
7.8 MB
D04_S4_L001_R2_001.fastq
15.5 MB
D04_S4_L001_R2_001.fastq_trimming_report.txt
5.4 kB
D04_S4_L001_R2_001_val_2.fq
7.8 MB
D04_S4_L001_pe.bam
2.3 MB
D04_S4_L001_pe.non-conversion_filtering.txt
251 Bytes
D04_S4_L001_pe.nonCG_filtered.M-bias.txt
26.5 kB
D04_S4_L001_pe.nonCG_filtered.bam
2.3 MB
D04_S4_L001_pe.nonCG_filtered.sorted.bam
1.7 MB
D04_S4_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D04_S4_L001_pe.nonCG_filtered_splitting_report.txt
824 Bytes
D05_S5_L001_PE_report.txt
1.8 kB
D05_S5_L001_R1_001.fastq
19.0 MB
D05_S5_L001_R1_001.fastq_trimming_report.txt
5.3 kB
D05_S5_L001_R1_001_val_1.fq
10.8 MB
D05_S5_L001_R2_001.fastq
19.0 MB
D05_S5_L001_R2_001.fastq_trimming_report.txt
5.4 kB
D05_S5_L001_R2_001_val_2.fq
10.8 MB
D05_S5_L001_pe.bam
3.2 MB
D05_S5_L001_pe.non-conversion_filtering.txt
250 Bytes
D05_S5_L001_pe.nonCG_filtered.M-bias.txt
28.4 kB
D05_S5_L001_pe.nonCG_filtered.bam
3.2 MB
D05_S5_L001_pe.nonCG_filtered.sorted.bam
2.4 MB
D05_S5_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D05_S5_L001_pe.nonCG_filtered_splitting_report.txt
828 Bytes
D06_S6_L001_PE_report.txt
1.8 kB
D06_S6_L001_R1_001.fastq
223.6 kB
D06_S6_L001_R1_001.fastq_trimming_report.txt
3.1 kB
D06_S6_L001_R1_001_val_1.fq
125.2 kB
D06_S6_L001_R2_001.fastq
223.6 kB
D06_S6_L001_R2_001.fastq_trimming_report.txt
3.3 kB
D06_S6_L001_R2_001_val_2.fq
125.5 kB
D06_S6_L001_pe.bam
37.3 kB
D06_S6_L001_pe.non-conversion_filtering.txt
248 Bytes
D06_S6_L001_pe.nonCG_filtered.M-bias.txt
21.1 kB
D06_S6_L001_pe.nonCG_filtered.bam
37.0 kB
D06_S6_L001_pe.nonCG_filtered.sorted.bam
30.7 kB
D06_S6_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D06_S6_L001_pe.nonCG_filtered_splitting_report.txt
809 Bytes
D07_S7_L001_PE_report.txt
1.8 kB
D07_S7_L001_R1_001.fastq
11.0 MB
D07_S7_L001_R1_001.fastq_trimming_report.txt
5.2 kB
D07_S7_L001_R1_001_val_1.fq
7.0 MB
D07_S7_L001_R2_001.fastq
11.0 MB
D07_S7_L001_R2_001.fastq_trimming_report.txt
5.3 kB
D07_S7_L001_R2_001_val_2.fq
7.0 MB
D07_S7_L001_pe.bam
2.2 MB
D07_S7_L001_pe.non-conversion_filtering.txt
249 Bytes
D07_S7_L001_pe.nonCG_filtered.M-bias.txt
28.6 kB
D07_S7_L001_pe.nonCG_filtered.bam
2.2 MB
D07_S7_L001_pe.nonCG_filtered.sorted.bam
1.7 MB
D07_S7_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D07_S7_L001_pe.nonCG_filtered_splitting_report.txt
826 Bytes
D08_S8_L001_PE_report.txt
1.8 kB
D08_S8_L001_R1_001.fastq
313.9 kB
D08_S8_L001_R1_001.fastq_trimming_report.txt
3.5 kB
D08_S8_L001_R1_001_val_1.fq
172.4 kB
D08_S8_L001_R2_001.fastq
313.9 kB
D08_S8_L001_R2_001.fastq_trimming_report.txt
3.7 kB
D08_S8_L001_R2_001_val_2.fq
172.2 kB
D08_S8_L001_pe.bam
57.3 kB
D08_S8_L001_pe.non-conversion_filtering.txt
248 Bytes
D08_S8_L001_pe.nonCG_filtered.M-bias.txt
22.6 kB
D08_S8_L001_pe.nonCG_filtered.bam
57.2 kB
D08_S8_L001_pe.nonCG_filtered.sorted.bam
47.2 kB
D08_S8_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D08_S8_L001_pe.nonCG_filtered_splitting_report.txt
811 Bytes
D09_S9_L001_PE_report.txt
1.8 kB
D09_S9_L001_R1_001.fastq
902.4 kB
D09_S9_L001_R1_001.fastq_trimming_report.txt
4.4 kB
D09_S9_L001_R1_001_val_1.fq
551.6 kB
D09_S9_L001_R2_001.fastq
902.4 kB
D09_S9_L001_R2_001.fastq_trimming_report.txt
4.5 kB
D09_S9_L001_R2_001_val_2.fq
553.9 kB
D09_S9_L001_pe.bam
155.4 kB
D09_S9_L001_pe.non-conversion_filtering.txt
248 Bytes
D09_S9_L001_pe.nonCG_filtered.M-bias.txt
23.8 kB
D09_S9_L001_pe.nonCG_filtered.bam
155.4 kB
D09_S9_L001_pe.nonCG_filtered.sorted.bam
124.7 kB
D09_S9_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D09_S9_L001_pe.nonCG_filtered_splitting_report.txt
815 Bytes
D10_S10_L001_PE_report.txt
1.9 kB
D10_S10_L001_R1_001.fastq
16.9 MB
D10_S10_L001_R1_001.fastq_trimming_report.txt
5.2 kB
D10_S10_L001_R1_001_val_1.fq
11.5 MB
D10_S10_L001_R2_001.fastq
16.9 MB
D10_S10_L001_R2_001.fastq_trimming_report.txt
5.4 kB
D10_S10_L001_R2_001_val_2.fq
11.5 MB
D10_S10_L001_pe.bam
3.2 MB
D10_S10_L001_pe.non-conversion_filtering.txt
253 Bytes
D10_S10_L001_pe.nonCG_filtered.M-bias.txt
29.6 kB
D10_S10_L001_pe.nonCG_filtered.bam
3.2 MB
D10_S10_L001_pe.nonCG_filtered.sorted.bam
2.3 MB
D10_S10_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D10_S10_L001_pe.nonCG_filtered_splitting_report.txt
829 Bytes
D11_S11_L001_PE_report.txt
1.9 kB
D11_S11_L001_R1_001.fastq
24.1 MB
D11_S11_L001_R1_001.fastq_trimming_report.txt
5.4 kB
D11_S11_L001_R1_001_val_1.fq
15.7 MB
D11_S11_L001_R2_001.fastq
24.1 MB
D11_S11_L001_R2_001.fastq_trimming_report.txt
5.5 kB
D11_S11_L001_R2_001_val_2.fq
15.7 MB
D11_S11_L001_pe.bam
4.8 MB
D11_S11_L001_pe.non-conversion_filtering.txt
252 Bytes
D11_S11_L001_pe.nonCG_filtered.M-bias.txt
30.3 kB
D11_S11_L001_pe.nonCG_filtered.bam
4.8 MB
D11_S11_L001_pe.nonCG_filtered.sorted.bam
3.4 MB
D11_S11_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D11_S11_L001_pe.nonCG_filtered_splitting_report.txt
831 Bytes
D12_S12_L001_PE_report.txt
1.8 kB
D12_S12_L001_R1_001.fastq
21.4 MB
D12_S12_L001_R1_001.fastq_trimming_report.txt
5.4 kB
D12_S12_L001_R1_001_val_1.fq
14.2 MB
D12_S12_L001_R2_001.fastq
21.4 MB
D12_S12_L001_R2_001.fastq_trimming_report.txt
5.5 kB
D12_S12_L001_R2_001_val_2.fq
14.2 MB
D12_S12_L001_pe.bam
3.9 MB
D12_S12_L001_pe.non-conversion_filtering.txt
252 Bytes
D12_S12_L001_pe.nonCG_filtered.M-bias.txt
28.8 kB
D12_S12_L001_pe.nonCG_filtered.bam
3.9 MB
D12_S12_L001_pe.nonCG_filtered.sorted.bam
2.8 MB
D12_S12_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D12_S12_L001_pe.nonCG_filtered_splitting_report.txt
827 Bytes
D13_S13_L001_PE_report.txt
1.8 kB
D13_S13_L001_R1_001.fastq
9.5 MB
D13_S13_L001_R1_001.fastq_trimming_report.txt
5.1 kB
D13_S13_L001_R1_001_val_1.fq
7.0 MB
D13_S13_L001_R2_001.fastq
9.5 MB
D13_S13_L001_R2_001.fastq_trimming_report.txt
5.3 kB
D13_S13_L001_R2_001_val_2.fq
7.0 MB
D13_S13_L001_pe.bam
2.0 MB
D13_S13_L001_pe.non-conversion_filtering.txt
250 Bytes
D13_S13_L001_pe.nonCG_filtered.M-bias.txt
29.0 kB
D13_S13_L001_pe.nonCG_filtered.bam
2.0 MB
D13_S13_L001_pe.nonCG_filtered.sorted.bam
1.5 MB
D13_S13_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D13_S13_L001_pe.nonCG_filtered_splitting_report.txt
826 Bytes
D14_S14_L001_PE_report.txt
1.8 kB
D14_S14_L001_R1_001.fastq
9.2 MB
D14_S14_L001_R1_001.fastq_trimming_report.txt
5.2 kB
D14_S14_L001_R1_001_val_1.fq
6.4 MB
D14_S14_L001_R2_001.fastq
9.2 MB
D14_S14_L001_R2_001.fastq_trimming_report.txt
5.3 kB
D14_S14_L001_R2_001_val_2.fq
6.4 MB
D14_S14_L001_pe.bam
1.7 MB
D14_S14_L001_pe.non-conversion_filtering.txt
250 Bytes
D14_S14_L001_pe.nonCG_filtered.M-bias.txt
28.1 kB
D14_S14_L001_pe.nonCG_filtered.bam
1.7 MB
D14_S14_L001_pe.nonCG_filtered.sorted.bam
1.3 MB
D14_S14_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D14_S14_L001_pe.nonCG_filtered_splitting_report.txt
826 Bytes
D15_S15_L001_PE_report.txt
1.8 kB
D15_S15_L001_R1_001.fastq
10.7 MB
D15_S15_L001_R1_001.fastq_trimming_report.txt
5.1 kB
D15_S15_L001_R1_001_val_1.fq
7.8 MB
D15_S15_L001_R2_001.fastq
10.7 MB
D15_S15_L001_R2_001.fastq_trimming_report.txt
5.3 kB
D15_S15_L001_R2_001_val_2.fq
7.8 MB
D15_S15_L001_pe.bam
2.1 MB
D15_S15_L001_pe.non-conversion_filtering.txt
250 Bytes
D15_S15_L001_pe.nonCG_filtered.M-bias.txt
28.4 kB
D15_S15_L001_pe.nonCG_filtered.bam
2.1 MB
D15_S15_L001_pe.nonCG_filtered.sorted.bam
1.5 MB
D15_S15_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D15_S15_L001_pe.nonCG_filtered_splitting_report.txt
825 Bytes
D16_S16_L001_PE_report.txt
1.8 kB
D16_S16_L001_R1_001.fastq
5.6 MB
D16_S16_L001_R1_001.fastq_trimming_report.txt
5.0 kB
D16_S16_L001_R1_001_val_1.fq
3.3 MB
D16_S16_L001_R2_001.fastq
5.6 MB
D16_S16_L001_R2_001.fastq_trimming_report.txt
5.1 kB
D16_S16_L001_R2_001_val_2.fq
3.3 MB
D16_S16_L001_pe.bam
989.8 kB
D16_S16_L001_pe.non-conversion_filtering.txt
250 Bytes
D16_S16_L001_pe.nonCG_filtered.M-bias.txt
25.7 kB
D16_S16_L001_pe.nonCG_filtered.bam
989.8 kB
D16_S16_L001_pe.nonCG_filtered.sorted.bam
765.6 kB
D16_S16_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D16_S16_L001_pe.nonCG_filtered_splitting_report.txt
824 Bytes
D17_S17_L001_PE_report.txt
1.8 kB
D17_S17_L001_R1_001.fastq
11.0 MB
D17_S17_L001_R1_001.fastq_trimming_report.txt
5.1 kB
D17_S17_L001_R1_001_val_1.fq
7.7 MB
D17_S17_L001_R2_001.fastq
11.0 MB
D17_S17_L001_R2_001.fastq_trimming_report.txt
5.3 kB
D17_S17_L001_R2_001_val_2.fq
7.7 MB
D17_S17_L001_pe.bam
2.2 MB
D17_S17_L001_pe.non-conversion_filtering.txt
250 Bytes
D17_S17_L001_pe.nonCG_filtered.M-bias.txt
28.9 kB
D17_S17_L001_pe.nonCG_filtered.bam
2.2 MB
D17_S17_L001_pe.nonCG_filtered.sorted.bam
1.6 MB
D17_S17_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D17_S17_L001_pe.nonCG_filtered_splitting_report.txt
827 Bytes
D18_S18_L001_PE_report.txt
1.8 kB
D18_S18_L001_R1_001.fastq
13.8 MB
D18_S18_L001_R1_001.fastq_trimming_report.txt
5.2 kB
D18_S18_L001_R1_001_val_1.fq
9.6 MB
D18_S18_L001_R2_001.fastq
13.8 MB
D18_S18_L001_R2_001.fastq_trimming_report.txt
5.4 kB
D18_S18_L001_R2_001_val_2.fq
9.6 MB
D18_S18_L001_pe.bam
2.7 MB
D18_S18_L001_pe.non-conversion_filtering.txt
251 Bytes
D18_S18_L001_pe.nonCG_filtered.M-bias.txt
28.8 kB
D18_S18_L001_pe.nonCG_filtered.bam
2.7 MB
D18_S18_L001_pe.nonCG_filtered.sorted.bam
2.0 MB
D18_S18_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D18_S18_L001_pe.nonCG_filtered_splitting_report.txt
828 Bytes
D19_S19_L001_PE_report.txt
1.8 kB
D19_S19_L001_R1_001.fastq
9.7 MB
D19_S19_L001_R1_001.fastq_trimming_report.txt
5.1 kB
D19_S19_L001_R1_001_val_1.fq
7.2 MB
D19_S19_L001_R2_001.fastq
9.7 MB
D19_S19_L001_R2_001.fastq_trimming_report.txt
5.3 kB
D19_S19_L001_R2_001_val_2.fq
7.2 MB
D19_S19_L001_pe.bam
2.1 MB
D19_S19_L001_pe.non-conversion_filtering.txt
250 Bytes
D19_S19_L001_pe.nonCG_filtered.M-bias.txt
29.2 kB
D19_S19_L001_pe.nonCG_filtered.bam
2.1 MB
D19_S19_L001_pe.nonCG_filtered.sorted.bam
1.5 MB
D19_S19_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D19_S19_L001_pe.nonCG_filtered_splitting_report.txt
827 Bytes
D20_S20_L001_PE_report.txt
1.8 kB
D20_S20_L001_R1_001.fastq
10.4 MB
D20_S20_L001_R1_001.fastq_trimming_report.txt
5.2 kB
D20_S20_L001_R1_001_val_1.fq
7.5 MB
D20_S20_L001_R2_001.fastq
10.4 MB
D20_S20_L001_R2_001.fastq_trimming_report.txt
5.3 kB
D20_S20_L001_R2_001_val_2.fq
7.5 MB
D20_S20_L001_pe.bam
2.1 MB
D20_S20_L001_pe.non-conversion_filtering.txt
250 Bytes
D20_S20_L001_pe.nonCG_filtered.M-bias.txt
28.4 kB
D20_S20_L001_pe.nonCG_filtered.bam
2.1 MB
D20_S20_L001_pe.nonCG_filtered.sorted.bam
1.5 MB
D20_S20_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D20_S20_L001_pe.nonCG_filtered_splitting_report.txt
826 Bytes
D21_S21_L001_PE_report.txt
1.8 kB
D21_S21_L001_R1_001.fastq
8.3 MB
D21_S21_L001_R1_001.fastq_trimming_report.txt
5.1 kB
D21_S21_L001_R1_001_val_1.fq
5.6 MB
D21_S21_L001_R2_001.fastq
8.3 MB
D21_S21_L001_R2_001.fastq_trimming_report.txt
5.3 kB
D21_S21_L001_R2_001_val_2.fq
5.6 MB
D21_S21_L001_pe.bam
1.5 MB
D21_S21_L001_pe.non-conversion_filtering.txt
250 Bytes
D21_S21_L001_pe.nonCG_filtered.M-bias.txt
27.5 kB
D21_S21_L001_pe.nonCG_filtered.bam
1.5 MB
D21_S21_L001_pe.nonCG_filtered.sorted.bam
1.0 MB
D21_S21_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D21_S21_L001_pe.nonCG_filtered_splitting_report.txt
823 Bytes
D22_S22_L001_PE_report.txt
1.8 kB
D22_S22_L001_R1_001.fastq
10.9 MB
D22_S22_L001_R1_001.fastq_trimming_report.txt
5.1 kB
D22_S22_L001_R1_001_val_1.fq
8.0 MB
D22_S22_L001_R2_001.fastq
10.9 MB
D22_S22_L001_R2_001.fastq_trimming_report.txt
5.3 kB
D22_S22_L001_R2_001_val_2.fq
8.0 MB
D22_S22_L001_pe.bam
2.3 MB
D22_S22_L001_pe.non-conversion_filtering.txt
250 Bytes
D22_S22_L001_pe.nonCG_filtered.M-bias.txt
29.2 kB
D22_S22_L001_pe.nonCG_filtered.bam
2.3 MB
D22_S22_L001_pe.nonCG_filtered.sorted.bam
1.7 MB
D22_S22_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D22_S22_L001_pe.nonCG_filtered_splitting_report.txt
827 Bytes
D23_S23_L001_PE_report.txt
1.8 kB
D23_S23_L001_R1_001.fastq
8.8 MB
D23_S23_L001_R1_001.fastq_trimming_report.txt
5.1 kB
D23_S23_L001_R1_001_val_1.fq
6.2 MB
D23_S23_L001_R2_001.fastq
8.8 MB
D23_S23_L001_R2_001.fastq_trimming_report.txt
5.3 kB
D23_S23_L001_R2_001_val_2.fq
6.2 MB
D23_S23_L001_pe.bam
1.8 MB
D23_S23_L001_pe.non-conversion_filtering.txt
250 Bytes
D23_S23_L001_pe.nonCG_filtered.M-bias.txt
28.6 kB
D23_S23_L001_pe.nonCG_filtered.bam
1.8 MB
D23_S23_L001_pe.nonCG_filtered.sorted.bam
1.4 MB
D23_S23_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D23_S23_L001_pe.nonCG_filtered_splitting_report.txt
826 Bytes
D24_S24_L001_PE_report.txt
1.8 kB
D24_S24_L001_R1_001.fastq
7.2 MB
D24_S24_L001_R1_001.fastq_trimming_report.txt
5.1 kB
D24_S24_L001_R1_001_val_1.fq
5.2 MB
D24_S24_L001_R2_001.fastq
7.2 MB
D24_S24_L001_R2_001.fastq_trimming_report.txt
5.2 kB
D24_S24_L001_R2_001_val_2.fq
5.2 MB
D24_S24_L001_pe.bam
1.4 MB
D24_S24_L001_pe.non-conversion_filtering.txt
250 Bytes
D24_S24_L001_pe.nonCG_filtered.M-bias.txt
27.9 kB
D24_S24_L001_pe.nonCG_filtered.bam
1.4 MB
D24_S24_L001_pe.nonCG_filtered.sorted.bam
1.0 MB
D24_S24_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D24_S24_L001_pe.nonCG_filtered_splitting_report.txt
824 Bytes
HM_only
.DS_Store
12.3 kB
CpG_OT_D02_S2_L001_pe.nonCG_filtered.txt
13.0 MB
CpG_OT_D04_S4_L001_pe.nonCG_filtered.txt
21.0 MB
CpG_OT_D05_S5_L001_pe.nonCG_filtered.txt
33.8 MB
CpG_OT_D06_S6_L001_pe.nonCG_filtered.txt
366.4 kB
CpG_OT_D08_S8_L001_pe.nonCG_filtered.txt
610.4 kB
CpG_OT_D09_S9_L001_pe.nonCG_filtered.txt
2.3 MB
CpG_OT_D14_S14_L001_pe.nonCG_filtered.txt
24.5 MB
CpG_OT_D15_S15_L001_pe.nonCG_filtered.txt
30.1 MB
CpG_OT_D17_S17_L001_pe.nonCG_filtered.txt
27.9 MB
CpG_OT_D18_S18_L001_pe.nonCG_filtered.txt
38.8 MB
CpG_OT_D20_S20_L001_pe.nonCG_filtered.txt
26.8 MB
CpG_OT_D21_S21_L001_pe.nonCG_filtered.txt
20.6 MB
CpG_OT_D23_S23_L001_pe.nonCG_filtered.txt
23.5 MB
CpG_OT_D24_S24_L001_pe.nonCG_filtered.txt
20.2 MB
Naming Sheet.csv
923 Bytes
Running.txt
22.5 kB
WO_4
.DS_Store
10.2 kB
CpG_OT_D02_S2_L001_pe.nonCG_filtered.txt
13.0 MB
CpG_OT_D04_S4_L001_pe.nonCG_filtered.txt
21.0 MB
CpG_OT_D05_S5_L001_pe.nonCG_filtered.txt
33.8 MB
CpG_OT_D14_S14_L001_pe.nonCG_filtered.txt
24.5 MB
CpG_OT_D15_S15_L001_pe.nonCG_filtered.txt
30.1 MB
CpG_OT_D17_S17_L001_pe.nonCG_filtered.txt
27.9 MB
CpG_OT_D18_S18_L001_pe.nonCG_filtered.txt
38.8 MB
CpG_OT_D20_S20_L001_pe.nonCG_filtered.txt
26.8 MB
CpG_OT_D21_S21_L001_pe.nonCG_filtered.txt
20.6 MB
CpG_OT_D23_S23_L001_pe.nonCG_filtered.txt
23.5 MB
CpG_OT_D24_S24_L001_pe.nonCG_filtered.txt
20.2 MB
20190729
.DS_Store
10.2 kB
Max
.DS_Store
18.4 kB
CHG_OB_D65_S65_L001_pe.nonCG_filtered.txt
2.8 kB
CHG_OB_D66_S66_L001_pe.nonCG_filtered.txt
2.3 kB
CHG_OB_D74_S74_L001_pe.nonCG_filtered.txt
1.6 kB
CHH_OB_D28_S28_L001_pe.nonCG_filtered.txt
152 Bytes
CHH_OB_D65_S65_L001_pe.nonCG_filtered.txt
2.5 kB
CHH_OB_D66_S66_L001_pe.nonCG_filtered.txt
1.5 kB
CHH_OB_D74_S74_L001_pe.nonCG_filtered.txt
1.0 kB
CpG_OB_D28_S28_L001_pe.nonCG_filtered.txt
788 Bytes
CpG_OB_D65_S65_L001_pe.nonCG_filtered.txt
62.4 kB
CpG_OB_D66_S66_L001_pe.nonCG_filtered.txt
46.4 kB
CpG_OB_D74_S74_L001_pe.nonCG_filtered.txt
25.9 kB
CpG_call
CpG_OT_D25_S25_L001_pe.nonCG_filtered.txt
80.1 MB
CpG_OT_D28_S28_L001_pe.nonCG_filtered.txt
91.5 MB
CpG_OT_D65_S65_L001_pe.nonCG_filtered.txt
92.2 MB
CpG_OT_D66_S66_L001_pe.nonCG_filtered.txt
94.3 MB
CpG_OT_D67_S67_L001_pe.nonCG_filtered.txt
110.3 MB
CpG_OT_D74_S74_L001_pe.nonCG_filtered.txt
76.9 MB
D25_S25_L001_PE_report.txt
1.8 kB
D25_S25_L001_R1_001.fastq
22.5 MB
D25_S25_L001_R1_001.fastq_trimming_report.txt
3.8 kB
D25_S25_L001_R1_001_val_1.fq
18.6 MB
D25_S25_L001_R2_001.fastq
22.5 MB
D25_S25_L001_R2_001.fastq_trimming_report.txt
3.9 kB
D25_S25_L001_R2_001_val_2.fq
18.6 MB
D25_S25_L001_pe.bam
5.4 MB
D25_S25_L001_pe.non-conversion_filtering.txt
251 Bytes
D25_S25_L001_pe.nonCG_filtered.M-bias.txt
18.7 kB
D25_S25_L001_pe.nonCG_filtered.bam
5.4 MB
D25_S25_L001_pe.nonCG_filtered.sorted.bam
3.5 MB
D25_S25_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D25_S25_L001_pe.nonCG_filtered_splitting_report.txt
829 Bytes
D28_S28_L001_PE_report.txt
1.9 kB
D28_S28_L001_R1_001.fastq
26.0 MB
D28_S28_L001_R1_001.fastq_trimming_report.txt
3.9 kB
D28_S28_L001_R1_001_val_1.fq
21.6 MB
D28_S28_L001_R2_001.fastq
26.0 MB
D28_S28_L001_R2_001.fastq_trimming_report.txt
4.0 kB
D28_S28_L001_R2_001_val_2.fq
21.6 MB
D28_S28_L001_pe.bam
6.5 MB
D28_S28_L001_pe.non-conversion_filtering.txt
251 Bytes
D28_S28_L001_pe.nonCG_filtered.M-bias.txt
19.2 kB
D28_S28_L001_pe.nonCG_filtered.bam
6.5 MB
D28_S28_L001_pe.nonCG_filtered.sorted.bam
4.2 MB
D28_S28_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D28_S28_L001_pe.nonCG_filtered_splitting_report.txt
831 Bytes
D65_S65_L001_PE_report.txt
1.9 kB
D65_S65_L001_R1_001.fastq
32.0 MB
D65_S65_L001_R1_001.fastq_trimming_report.txt
3.9 kB
D65_S65_L001_R1_001_val_1.fq
28.1 MB
D65_S65_L001_R2_001.fastq
32.0 MB
D65_S65_L001_R2_001.fastq_trimming_report.txt
4.0 kB
D65_S65_L001_R2_001_val_2.fq
28.1 MB
D65_S65_L001_pe.bam
8.4 MB
D65_S65_L001_pe.non-conversion_filtering.txt
253 Bytes
D65_S65_L001_pe.nonCG_filtered.M-bias.txt
19.8 kB
D65_S65_L001_pe.nonCG_filtered.bam
8.3 MB
D65_S65_L001_pe.nonCG_filtered.sorted.bam
5.1 MB
D65_S65_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D65_S65_L001_pe.nonCG_filtered_splitting_report.txt
833 Bytes
D66_S66_L001_PE_report.txt
1.9 kB
D66_S66_L001_R1_001.fastq
34.3 MB
D66_S66_L001_R1_001.fastq_trimming_report.txt
3.9 kB
D66_S66_L001_R1_001_val_1.fq
28.6 MB
D66_S66_L001_R2_001.fastq
34.3 MB
D66_S66_L001_R2_001.fastq_trimming_report.txt
4.0 kB
D66_S66_L001_R2_001_val_2.fq
28.6 MB
D66_S66_L001_pe.bam
8.8 MB
D66_S66_L001_pe.non-conversion_filtering.txt
253 Bytes
D66_S66_L001_pe.nonCG_filtered.M-bias.txt
19.8 kB
D66_S66_L001_pe.nonCG_filtered.bam
8.7 MB
D66_S66_L001_pe.nonCG_filtered.sorted.bam
5.2 MB
D66_S66_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D66_S66_L001_pe.nonCG_filtered_splitting_report.txt
833 Bytes
D67_S67_L001_PE_report.txt
1.8 kB
D67_S67_L001_R1_001.fastq
33.5 MB
D67_S67_L001_R1_001.fastq_trimming_report.txt
3.9 kB
D67_S67_L001_R1_001_val_1.fq
27.6 MB
D67_S67_L001_R2_001.fastq
33.5 MB
D67_S67_L001_R2_001.fastq_trimming_report.txt
4.0 kB
D67_S67_L001_R2_001_val_2.fq
27.6 MB
D67_S67_L001_pe.bam
7.5 MB
D67_S67_L001_pe.non-conversion_filtering.txt
252 Bytes
D67_S67_L001_pe.nonCG_filtered.M-bias.txt
18.6 kB
D67_S67_L001_pe.nonCG_filtered.bam
7.5 MB
D67_S67_L001_pe.nonCG_filtered.sorted.bam
4.6 MB
D67_S67_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D67_S67_L001_pe.nonCG_filtered_splitting_report.txt
829 Bytes
D74_S74_L001_PE_report.txt
1.9 kB
D74_S74_L001_R1_001.fastq
28.2 MB
D74_S74_L001_R1_001.fastq_trimming_report.txt
3.8 kB
D74_S74_L001_R1_001_val_1.fq
23.8 MB
D74_S74_L001_R2_001.fastq
28.2 MB
D74_S74_L001_R2_001.fastq_trimming_report.txt
4.1 kB
D74_S74_L001_R2_001_val_2.fq
23.8 MB
D74_S74_L001_pe.bam
7.3 MB
D74_S74_L001_pe.non-conversion_filtering.txt
253 Bytes
D74_S74_L001_pe.nonCG_filtered.M-bias.txt
19.6 kB
D74_S74_L001_pe.nonCG_filtered.bam
7.2 MB
D74_S74_L001_pe.nonCG_filtered.sorted.bam
5.0 MB
D74_S74_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D74_S74_L001_pe.nonCG_filtered_splitting_report.txt
833 Bytes
Running.txt
5.7 kB
Min
.DS_Store
18.4 kB
CpG_call
CpG_OT_D41_S41_L001_pe.nonCG_filtered.txt
33.2 MB
CpG_OT_D44_S44_L001_pe.nonCG_filtered.txt
31.0 MB
CpG_OT_D45_S45_L001_pe.nonCG_filtered.txt
9.7 MB
CpG_OT_D47_S47_L001_pe.nonCG_filtered.txt
29.3 MB
CpG_OT_D48_S48_L001_pe.nonCG_filtered.txt
24.9 MB
CpG_OT_D75_S75_L001_pe.nonCG_filtered.txt
46.3 MB
D41_S41_L001_PE_report.txt
1.8 kB
D41_S41_L001_R1_001.fastq
16.2 MB
D41_S41_L001_R1_001.fastq_trimming_report.txt
3.7 kB
D41_S41_L001_R1_001_val_1.fq
14.5 MB
D41_S41_L001_R2_001.fastq
16.2 MB
D41_S41_L001_R2_001.fastq_trimming_report.txt
3.8 kB
D41_S41_L001_R2_001_val_2.fq
14.5 MB
D41_S41_L001_pe.bam
4.6 MB
D41_S41_L001_pe.non-conversion_filtering.txt
253 Bytes
D41_S41_L001_pe.nonCG_filtered.M-bias.txt
18.7 kB
D41_S41_L001_pe.nonCG_filtered.bam
4.6 MB
D41_S41_L001_pe.nonCG_filtered.sorted.bam
2.8 MB
D41_S41_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D41_S41_L001_pe.nonCG_filtered_splitting_report.txt
829 Bytes
D44_S44_L001_PE_report.txt
1.8 kB
D44_S44_L001_R1_001.fastq
16.7 MB
D44_S44_L001_R1_001.fastq_trimming_report.txt
3.7 kB
D44_S44_L001_R1_001_val_1.fq
14.7 MB
D44_S44_L001_R2_001.fastq
16.7 MB
D44_S44_L001_R2_001.fastq_trimming_report.txt
3.9 kB
D44_S44_L001_R2_001_val_2.fq
14.7 MB
D44_S44_L001_pe.bam
4.6 MB
D44_S44_L001_pe.non-conversion_filtering.txt
251 Bytes
D44_S44_L001_pe.nonCG_filtered.M-bias.txt
18.9 kB
D44_S44_L001_pe.nonCG_filtered.bam
4.6 MB
D44_S44_L001_pe.nonCG_filtered.sorted.bam
2.9 MB
D44_S44_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D44_S44_L001_pe.nonCG_filtered_splitting_report.txt
830 Bytes
D45_S45_L001_PE_report.txt
1.8 kB
D45_S45_L001_R1_001.fastq
5.1 MB
D45_S45_L001_R1_001.fastq_trimming_report.txt
3.4 kB
D45_S45_L001_R1_001_val_1.fq
4.5 MB
D45_S45_L001_R2_001.fastq
5.1 MB
D45_S45_L001_R2_001.fastq_trimming_report.txt
3.6 kB
D45_S45_L001_R2_001_val_2.fq
4.5 MB
D45_S45_L001_pe.bam
1.4 MB
D45_S45_L001_pe.non-conversion_filtering.txt
250 Bytes
D45_S45_L001_pe.nonCG_filtered.M-bias.txt
17.7 kB
D45_S45_L001_pe.nonCG_filtered.bam
1.4 MB
D45_S45_L001_pe.nonCG_filtered.sorted.bam
932.8 kB
D45_S45_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D45_S45_L001_pe.nonCG_filtered_splitting_report.txt
826 Bytes
D47_S47_L001_PE_report.txt
1.8 kB
D47_S47_L001_R1_001.fastq
13.9 MB
D47_S47_L001_R1_001.fastq_trimming_report.txt
3.6 kB
D47_S47_L001_R1_001_val_1.fq
12.3 MB
D47_S47_L001_R2_001.fastq
13.9 MB
D47_S47_L001_R2_001.fastq_trimming_report.txt
3.8 kB
D47_S47_L001_R2_001_val_2.fq
12.3 MB
D47_S47_L001_pe.bam
4.3 MB
D47_S47_L001_pe.non-conversion_filtering.txt
253 Bytes
D47_S47_L001_pe.nonCG_filtered.M-bias.txt
19.0 kB
D47_S47_L001_pe.nonCG_filtered.bam
4.3 MB
D47_S47_L001_pe.nonCG_filtered.sorted.bam
2.7 MB
D47_S47_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D47_S47_L001_pe.nonCG_filtered_splitting_report.txt
830 Bytes
D48_S48_L001_PE_report.txt
1.8 kB
D48_S48_L001_R1_001.fastq
12.2 MB
D48_S48_L001_R1_001.fastq_trimming_report.txt
3.6 kB
D48_S48_L001_R1_001_val_1.fq
10.8 MB
D48_S48_L001_R2_001.fastq
12.2 MB
D48_S48_L001_R2_001.fastq_trimming_report.txt
3.8 kB
D48_S48_L001_R2_001_val_2.fq
10.8 MB
D48_S48_L001_pe.bam
3.7 MB
D48_S48_L001_pe.non-conversion_filtering.txt
252 Bytes
D48_S48_L001_pe.nonCG_filtered.M-bias.txt
18.8 kB
D48_S48_L001_pe.nonCG_filtered.bam
3.7 MB
D48_S48_L001_pe.nonCG_filtered.sorted.bam
2.4 MB
D48_S48_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D48_S48_L001_pe.nonCG_filtered_splitting_report.txt
830 Bytes
D75_S75_L001_PE_report.txt
1.9 kB
D75_S75_L001_R1_001.fastq
28.4 MB
D75_S75_L001_R1_001.fastq_trimming_report.txt
3.8 kB
D75_S75_L001_R1_001_val_1.fq
24.5 MB
D75_S75_L001_R2_001.fastq
28.4 MB
D75_S75_L001_R2_001.fastq_trimming_report.txt
4.0 kB
D75_S75_L001_R2_001_val_2.fq
24.5 MB
D75_S75_L001_pe.bam
7.3 MB
D75_S75_L001_pe.non-conversion_filtering.txt
253 Bytes
D75_S75_L001_pe.nonCG_filtered.M-bias.txt
19.5 kB
D75_S75_L001_pe.nonCG_filtered.bam
7.2 MB
D75_S75_L001_pe.nonCG_filtered.sorted.bam
4.8 MB
D75_S75_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D75_S75_L001_pe.nonCG_filtered_splitting_report.txt
832 Bytes
Running.txt
5.7 kB
Orig
.DS_Store
18.4 kB
CpG_call
CpG_OT_D32_S32_L001_pe.nonCG_filtered.txt
48.6 MB
CpG_OT_D33_S33_L001_pe.nonCG_filtered.txt
16.0 MB
CpG_OT_D35_S35_L001_pe.nonCG_filtered.txt
41.9 MB
CpG_OT_D38_S38_L001_pe.nonCG_filtered.txt
40.7 MB
CpG_OT_D39_S39_L001_pe.nonCG_filtered.txt
40.2 MB
CpG_OT_D40_S40_L001_pe.nonCG_filtered.txt
35.0 MB
CpG_OT_D73_S73_L001_pe.nonCG_filtered.txt
55.1 MB
D32_S32_L001_PE_report.txt
1.8 kB
D32_S32_L001_R1_001.fastq
32.9 MB
D32_S32_L001_R1_001.fastq_trimming_report.txt
3.9 kB
D32_S32_L001_R1_001_val_1.fq
26.1 MB
D32_S32_L001_R2_001.fastq
32.9 MB
D32_S32_L001_R2_001.fastq_trimming_report.txt
4.1 kB
D32_S32_L001_R2_001_val_2.fq
26.1 MB
D32_S32_L001_pe.bam
7.1 MB
D32_S32_L001_pe.non-conversion_filtering.txt
252 Bytes
D32_S32_L001_pe.nonCG_filtered.M-bias.txt
18.8 kB
D32_S32_L001_pe.nonCG_filtered.bam
7.1 MB
D32_S32_L001_pe.nonCG_filtered.sorted.bam
4.5 MB
D32_S32_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D32_S32_L001_pe.nonCG_filtered_splitting_report.txt
830 Bytes
D33_S33_L001_PE_report.txt
1.8 kB
D33_S33_L001_R1_001.fastq
11.3 MB
D33_S33_L001_R1_001.fastq_trimming_report.txt
3.8 kB
D33_S33_L001_R1_001_val_1.fq
8.9 MB
D33_S33_L001_R2_001.fastq
11.3 MB
D33_S33_L001_R2_001.fastq_trimming_report.txt
3.9 kB
D33_S33_L001_R2_001_val_2.fq
8.9 MB
D33_S33_L001_pe.bam
2.4 MB
D33_S33_L001_pe.non-conversion_filtering.txt
251 Bytes
D33_S33_L001_pe.nonCG_filtered.M-bias.txt
17.7 kB
D33_S33_L001_pe.nonCG_filtered.bam
2.4 MB
D33_S33_L001_pe.nonCG_filtered.sorted.bam
1.6 MB
D33_S33_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D33_S33_L001_pe.nonCG_filtered_splitting_report.txt
828 Bytes
D35_S35_L001_PE_report.txt
1.9 kB
D35_S35_L001_R1_001.fastq
25.9 MB
D35_S35_L001_R1_001.fastq_trimming_report.txt
3.8 kB
D35_S35_L001_R1_001_val_1.fq
20.6 MB
D35_S35_L001_R2_001.fastq
25.9 MB
D35_S35_L001_R2_001.fastq_trimming_report.txt
4.0 kB
D35_S35_L001_R2_001_val_2.fq
20.6 MB
D35_S35_L001_pe.bam
6.0 MB
D35_S35_L001_pe.non-conversion_filtering.txt
251 Bytes
D35_S35_L001_pe.nonCG_filtered.M-bias.txt
18.9 kB
D35_S35_L001_pe.nonCG_filtered.bam
6.0 MB
D35_S35_L001_pe.nonCG_filtered.sorted.bam
3.9 MB
D35_S35_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D35_S35_L001_pe.nonCG_filtered_splitting_report.txt
830 Bytes
D38_S38_L001_PE_report.txt
1.9 kB
D38_S38_L001_R1_001.fastq
21.9 MB
D38_S38_L001_R1_001.fastq_trimming_report.txt
3.9 kB
D38_S38_L001_R1_001_val_1.fq
18.4 MB
D38_S38_L001_R2_001.fastq
21.9 MB
D38_S38_L001_R2_001.fastq_trimming_report.txt
4.0 kB
D38_S38_L001_R2_001_val_2.fq
18.4 MB
D38_S38_L001_pe.bam
5.4 MB
D38_S38_L001_pe.non-conversion_filtering.txt
251 Bytes
D38_S38_L001_pe.nonCG_filtered.M-bias.txt
19.2 kB
D38_S38_L001_pe.nonCG_filtered.bam
5.3 MB
D38_S38_L001_pe.nonCG_filtered.sorted.bam
3.8 MB
D38_S38_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D38_S38_L001_pe.nonCG_filtered_splitting_report.txt
831 Bytes
D39_S39_L001_PE_report.txt
1.9 kB
D39_S39_L001_R1_001.fastq
18.5 MB
D39_S39_L001_R1_001.fastq_trimming_report.txt
3.8 kB
D39_S39_L001_R1_001_val_1.fq
15.7 MB
D39_S39_L001_R2_001.fastq
18.5 MB
D39_S39_L001_R2_001.fastq_trimming_report.txt
4.0 kB
D39_S39_L001_R2_001_val_2.fq
15.6 MB
D39_S39_L001_pe.bam
5.2 MB
D39_S39_L001_pe.non-conversion_filtering.txt
251 Bytes
D39_S39_L001_pe.nonCG_filtered.M-bias.txt
19.2 kB
D39_S39_L001_pe.nonCG_filtered.bam
5.2 MB
D39_S39_L001_pe.nonCG_filtered.sorted.bam
3.8 MB
D39_S39_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D39_S39_L001_pe.nonCG_filtered_splitting_report.txt
831 Bytes
D40_S40_L001_PE_report.txt
1.9 kB
D40_S40_L001_R1_001.fastq
17.1 MB
D40_S40_L001_R1_001.fastq_trimming_report.txt
3.8 kB
D40_S40_L001_R1_001_val_1.fq
14.7 MB
D40_S40_L001_R2_001.fastq
17.1 MB
D40_S40_L001_R2_001.fastq_trimming_report.txt
4.0 kB
D40_S40_L001_R2_001_val_2.fq
14.7 MB
D40_S40_L001_pe.bam
4.5 MB
D40_S40_L001_pe.non-conversion_filtering.txt
252 Bytes
D40_S40_L001_pe.nonCG_filtered.M-bias.txt
19.1 kB
D40_S40_L001_pe.nonCG_filtered.bam
4.5 MB
D40_S40_L001_pe.nonCG_filtered.sorted.bam
3.2 MB
D40_S40_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D40_S40_L001_pe.nonCG_filtered_splitting_report.txt
831 Bytes
D73_S73_L001_PE_report.txt
1.9 kB
D73_S73_L001_R1_001.fastq
27.5 MB
D73_S73_L001_R1_001.fastq_trimming_report.txt
3.8 kB
D73_S73_L001_R1_001_val_1.fq
24.1 MB
D73_S73_L001_R2_001.fastq
27.5 MB
D73_S73_L001_R2_001.fastq_trimming_report.txt
3.9 kB
D73_S73_L001_R2_001_val_2.fq
24.1 MB
D73_S73_L001_pe.bam
7.0 MB
D73_S73_L001_pe.non-conversion_filtering.txt
253 Bytes
D73_S73_L001_pe.nonCG_filtered.M-bias.txt
19.6 kB
D73_S73_L001_pe.nonCG_filtered.bam
6.9 MB
D73_S73_L001_pe.nonCG_filtered.sorted.bam
4.8 MB
D73_S73_L001_pe.nonCG_filtered.sorted.bam.bai
96 Bytes
D73_S73_L001_pe.nonCG_filtered_splitting_report.txt
833 Bytes
Running.txt
6.6 kB
All_CpG_Calls
.DS_Store
14.3 kB
CpG_OT_D02_S2_L001_pe.nonCG_filtered.txt
13.0 MB
CpG_OT_D03_S3_L001_pe.nonCG_filtered.txt
26.4 MB
CpG_OT_D04_S4_L001_pe.nonCG_filtered.txt
21.0 MB
CpG_OT_D05_S5_L001_pe.nonCG_filtered.txt
33.8 MB
CpG_OT_D07_S7_L001_pe.nonCG_filtered.txt
23.5 MB
CpG_OT_D10_S10_L001_pe.nonCG_filtered.txt
29.9 MB
CpG_OT_D11_S11_L001_pe.nonCG_filtered.txt
51.5 MB
CpG_OT_D12_S12_L001_pe.nonCG_filtered.txt
49.1 MB
CpG_OT_D13_S13_L001_pe.nonCG_filtered.txt
24.9 MB
CpG_OT_D14_S14_L001_pe.nonCG_filtered.txt
24.5 MB
CpG_OT_D15_S15_L001_pe.nonCG_filtered.txt
30.1 MB
CpG_OT_D17_S17_L001_pe.nonCG_filtered.txt
27.9 MB
CpG_OT_D18_S18_L001_pe.nonCG_filtered.txt
38.8 MB
CpG_OT_D19_S19_L001_pe.nonCG_filtered.txt
23.6 MB
CpG_OT_D20_S20_L001_pe.nonCG_filtered.txt
26.8 MB
CpG_OT_D21_S21_L001_pe.nonCG_filtered.txt
20.6 MB
CpG_OT_D22_S22_L001_pe.nonCG_filtered.txt
26.5 MB
CpG_OT_D23_S23_L001_pe.nonCG_filtered.txt
23.5 MB
CpG_OT_D24_S24_L001_pe.nonCG_filtered.txt
20.2 MB
CpG_OT_D25_S25_L001_pe.nonCG_filtered.txt
80.1 MB
CpG_OT_D28_S28_L001_pe.nonCG_filtered.txt
91.5 MB
CpG_OT_D32_S32_L001_pe.nonCG_filtered.txt
48.6 MB
CpG_OT_D33_S33_L001_pe.nonCG_filtered.txt
16.0 MB
CpG_OT_D35_S35_L001_pe.nonCG_filtered.txt
41.9 MB
CpG_OT_D38_S38_L001_pe.nonCG_filtered.txt
40.7 MB
CpG_OT_D39_S39_L001_pe.nonCG_filtered.txt
40.2 MB
CpG_OT_D40_S40_L001_pe.nonCG_filtered.txt
35.0 MB
CpG_OT_D41_S41_L001_pe.nonCG_filtered.txt
33.2 MB
CpG_OT_D44_S44_L001_pe.nonCG_filtered.txt
31.0 MB
CpG_OT_D45_S45_L001_pe.nonCG_filtered.txt
9.7 MB
CpG_OT_D47_S47_L001_pe.nonCG_filtered.txt
29.3 MB
CpG_OT_D48_S48_L001_pe.nonCG_filtered.txt
24.9 MB
CpG_OT_D65_S65_L001_pe.nonCG_filtered.txt
92.2 MB
CpG_OT_D66_S66_L001_pe.nonCG_filtered.txt
94.3 MB
CpG_OT_D67_S67_L001_pe.nonCG_filtered.txt
110.3 MB
CpG_OT_D73_S73_L001_pe.nonCG_filtered.txt
55.1 MB
CpG_OT_D74_S74_L001_pe.nonCG_filtered.txt
76.9 MB
CpG_OT_D75_S75_L001_pe.nonCG_filtered.txt
46.3 MB
MI_17.png
443.4 kB
Naming File.csv
1.9 kB
SpecificSites.ipynb
599.7 kB
output
mCincrease.pdf
16.1 kB
magicCall.pdf
15.9 kB
magicCall_log.pdf
14.3 kB
Reads.zip
1.1 GB
SortingData
2019-07-15
Folder_001
yitong_07152019
Compensation Controls_Citrine Stained Control_015.fcs
262.7 kB
Compensation Controls_Unstained Control_014.fcs
262.7 kB
Compensation Controls_mCherry Stained Control_016.fcs
262.7 kB
Specimen_001_10_012.fcs
5.2 MB
Specimen_001_1_003.fcs
5.2 MB
Specimen_001_2_004.fcs
5.2 MB
Specimen_001_3_005.fcs
5.2 MB
Specimen_001_4_006.fcs
5.2 MB
Specimen_001_5_007.fcs
5.2 MB
Specimen_001_6_008.fcs
5.2 MB
Specimen_001_7_009.fcs
5.2 MB
Specimen_001_8_010.fcs
5.2 MB
Specimen_001_9_011.fcs
5.2 MB
Specimen_001_analysis only 11_013.fcs
5.2 MB
Specimen_001_unstained_001.fcs
522.7 kB
Specimen_001_unstained_001_002.fcs
522.7 kB
ana.efl
215.4 kB
yitong_07152019-Batch_Analysis_15072019170344.pdf
514.6 kB
Untitled.ipynb
790 Bytes