Published 2016 | Version v1
Dataset Open

V. cholerae JAS290 delta-tcpS

Creators

  • 1. ROR icon California Institute of Technology

Description

Classical strain with ctxA deletionStrain name JAS290 (tcpS gene knockout)Cell harbors pMT5 plasmid (inducible toxT)

Technical info

Tilt Series Date: 2016-08-07

Data Taken By: Yi-Wei Chang

Species / Specimen: Vibrio cholerae

Strain: O395-N1

Tilt Series Settings: Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 140.0 eV/Ų, defocus: -6.0 μm, magnification: 27500x.

Microscope: Caltech Polara

Acquisition Software: UCSFTomo

Upload Method: pipeline

Processing Software Used: Raptor

Collaborators and Roles: Strain from Gabriela Kovacikova

Purification / Growth Conditions / Treatment: O/N cultures of Vibrio cholerae O395 N1 pMT5 grown in LB, 1 mM IPTG and 100 ug/mL ampicillin.

Sample Preparation: Vitrobot (MK iv) settings: 100% humidity, 3.5µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 3 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.

Attached Files

20160807_YWC217_10020.mrc, Tilt Series (Pixel Size 0.39 nm), 3.4 GB

20160807_YWC217_10020_part121_22.rec, Reconstruction (Pixel Size 1.56 nm), 534.5 MB

Files

keyimg_ycw2016-08-07-20.jpg

Files (4.0 GB)

Name Size
3.4 GB (external) Download
534.5 MB (external) Download
md5:aed0a15e259ec8261e8512f5e30ad1f5
1.1 MB Preview Download
md5:21ac8caf11f9e5f0aec94cf5821a5e35
16.3 MB Preview Download

Additional details

Identifiers

DOI
10.22002/je80h-54n82
TILT_SERIES_ID
ycw2016-08-07-20

Funding

NIH
HHMI
Beckman Institute
Gordon and Betty Moore Foundation
Agouron Institute
John Templeton Foundation

Dates

Collected
2016-08-07
Created
2016-08-07
Updated
2016-08-18