Preview

parresgold_2023_dimer_networks_code
- analyze_1D_screen.ipynb
  
  2.9 MB
- analyze_2D_screen.ipynb
  
  204.3 kB
- analyze_connectivity_trends.ipynb
  
  1.9 MB
- analyze_equilibration_kinetics.ipynb
  
  664.2 kB
- analyze_expression_noise_robustness.ipynb
  
  674.0 kB
- analyze_intrinsic_noise.ipynb
  
  593.7 kB
- boolean_complexity.ipynb
  
  100.3 kB
- dimer_network_utilities.py
  
  35.3 kB
- generate_param_screen.ipynb
  
  35.0 kB
- optimizer_dualannealing.ipynb
  
  334.0 kB
- remake_Fig1.ipynb
  
  182.1 kB
- remake_Fig2.ipynb
  
  142.1 kB
- remake_Fig3.ipynb
  
  651.1 kB
- remake_Fig4.ipynb
  
  4.9 MB
- remake_Fig5.ipynb
  
  615.7 kB
- remake_Fig6.ipynb
  
  1.5 MB
- remake_FigS5.ipynb
  
  2.4 MB
- remake_FigS7.ipynb
  
  186.1 kB
- remake_GraphicalAbstract.ipynb
  
  62.1 kB
- simulate_individual_networks.ipynb
  
  136.2 kB
- versatility_optimization_trials
  - code
    - makefuncs.py
      
      5.5 kB
    - opt_utils.py
      
      21.6 kB
    - summarize_plots.py
      
      2.6 kB
    - tuning.py
      
      55.9 kB
    - utilities.py
      
      11.4 kB
  - data
    - 2d
      - custom_2D_target_names.npy
        
        788 Bytes
      - custom_2D_targets.npy
        
        12.8 kB
    - K_sets
      - 8M_connectivity.npy
        
        19.1 kB
    - voxel_averages
      - 10M_voxel_averages.npy
        
        161.9 kB
      - 11M_voxel_averages.npy
        
        166.0 kB
      - 12M_voxel_averages.npy
        
        165.0 kB
      - 2M_voxel_averages.npy
        
        40.0 kB
      - 3M_voxel_averages.npy
        
        92.5 kB
      - 4M_voxel_averages.npy
        
        112.0 kB
      - 5M_voxel_averages.npy
        
        129.0 kB
      - 6M_voxel_averages.npy
        
        137.9 kB
      - 7M_voxel_averages.npy
        
        146.0 kB
      - 8M_voxel_averages.npy
        
        151.8 kB
      - 9M_voxel_averages.npy
        
        156.6 kB
  - requirements.txt
    
    3.9 kB
  - requirements2.txt
    
    3.4 kB
  - run_scripts
    - bump_inference_tests_ainner_BoundedBumpsSeparate_main.py
      
      3.7 kB
    - bump_inference_tests_ainner_BoundedBumpsSeparate_main_randomK.py
      
      3.8 kB
    - bump_inference_tests_ainner_BoundedBumpsSeparate_main_randomK_jacobTargets.py
      
      4.1 kB
    - bump_inference_tests_ainner_BoundedBumpsSeparate_main_randomK_jacobTargets_perDimer.py
      
      5.9 kB
    - bump_inference_tests_ainner_BoundedBumpsSeparate_main_randomK_jacobTargets_perDimer_multi.py
      
      6.9 kB
    - bump_inference_tests_ainner_BoundedBumpsSeparate_main_randomK_jacobTargets_perDimer_ray.py
      
      11.8 kB
    - bump_inference_tests_ainner_BoundedBumpsSeparate_main_randomK_jacobTargets_perDimer_ray_2D.py
      
      14.5 kB
    - full_run1.sh
      
      368 Bytes
    - full_run2.sh
      
      463 Bytes
    - full_run2_2d.sh
      
      366 Bytes
    - full_run2_specialKs_m8.sh
      
      406 Bytes
    - inference_tests_1.py
      
      7.4 kB
    - inference_tests_3m_univ485.py
      
      7.4 kB
    - inference_tests_3m_univ485_cluster.py
      
      6.8 kB
    - inner_opt_tests.py
      
      3.8 kB
    - job_trier.py
      
      36.1 kB
    - job_trier2.py
      
      7.6 kB
    - metacluster_inference_tests_1.py
      
      4.6 kB
    - metacluster_inference_tests_1_ainner.py
      
      4.7 kB
    - opt_script_pymoo.py
      
      3.8 kB
    - pilot_run1.sh
      
      313 Bytes
    - randomK_scriptGen.py
      
      1.8 kB
    - randomK_scriptGen2.py
      
      1.7 kB
    - setup_AWS.sh
      
      1.1 kB
    - summarize_targets.py
      
      1.2 kB

parresgold_2023_dimer_networks_code.zip