linmo_v02.zip
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__MACOSX
linmo_v02
._.DS_Store
120 Bytes
._README.md
385 Bytes
Code
._.DS_Store
120 Bytes
._requirements.txt
384 Bytes
linmo
._plot.py
644 Bytes
._resample.py
650 Bytes
._simulate.py
704 Bytes
Data
._.DS_Store
120 Bytes
._comp_prog_model.zip
176 Bytes
._predet_states_model.zip
176 Bytes
._zebrafish_retina_middle.txt
176 Bytes
extrinsic_model
._.DS_Store
120 Bytes
Figures
._.DS_Store
120 Bytes
._Figure1.pdf
120 Bytes
._Figure2.pdf
120 Bytes
._Figure3.pdf
120 Bytes
._Figure4.pdf
120 Bytes
._Figure5.pdf
120 Bytes
._Figure6.pdf
120 Bytes
._Figure7.pdf
323 Bytes
._FigureS1.pdf
120 Bytes
._FigureS2.pdf
120 Bytes
._FigureS3.pdf
120 Bytes
._FigureS4.pdf
120 Bytes
._FigureS5.pdf
120 Bytes
._FigureS6.pdf
120 Bytes
._FigureS7.pdf
120 Bytes
._GraphicalAbstract.pdf
120 Bytes
Scripts
._.DS_Store
120 Bytes
._Figure3.ipynb
726 Bytes
._Figure3_comp_prog_model_data_generation.py
628 Bytes
._Figure4.ipynb
176 Bytes
._Figure5.ipynb
176 Bytes
._Figure6.ipynb
176 Bytes
._Figure7B.ipynb
176 Bytes
._Figure7C.ipynb
176 Bytes
._FigureS1.ipynb
176 Bytes
._FigureS1_predet_states_model_data_generation.py
632 Bytes
._FigureS2A-C.ipynb
176 Bytes
._FigureS2D-G.ipynb
176 Bytes
._FigureS2H.ipynb
176 Bytes
._FigureS3.ipynb
737 Bytes
._FigureS3_extrinsic_data_generation.py
679 Bytes
._FigureS3_null_data_generation.py
674 Bytes
._FigureS4.ipynb
176 Bytes
._FigureS5BC.ipynb
649 Bytes
._FigureS5BD_RR_data_generation.py
634 Bytes
._FigureS5CE_MM_data_generation.py
634 Bytes
._FigureS5DE.ipynb
634 Bytes
._FigureS6.ipynb
176 Bytes
._FigureS7.ipynb
176 Bytes
linmo_v02
.DS_Store
14.3 kB
Code
.DS_Store
8.2 kB
linmo
.DS_Store
6.1 kB
__init__.py
612 Bytes
__pycache__
plot.py
55.1 kB
resample.py
131.4 kB
simulate.py
3.3 kB
requirements.txt
156 Bytes
setup.py
1.2 kB
Data
.DS_Store
14.3 kB
Fig6B_X0.csv
1.4 MB
Fig6B_X1.csv
1.5 MB
Fig6B_X2.csv
1.5 MB
comp_prog_model
comp_prog_model.zip
63.5 MB
extrinsic_model
.DS_Store
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df_null_zscores_i_c_melt_subset_spontaneous_rep99.csv
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df_true_melt_subset_spontaneous_rep0.csv
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df_true_melt_subset_spontaneous_rep1.csv
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df_true_melt_subset_spontaneous_rep10.csv
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df_true_melt_subset_spontaneous_rep11.csv
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df_true_melt_subset_spontaneous_rep12.csv
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df_true_melt_subset_spontaneous_rep13.csv
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df_true_melt_subset_spontaneous_rep14.csv
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df_true_melt_subset_spontaneous_rep15.csv
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df_true_melt_subset_spontaneous_rep16.csv
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df_true_melt_subset_spontaneous_rep17.csv
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df_true_melt_subset_spontaneous_rep18.csv
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df_true_melt_subset_spontaneous_rep19.csv
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df_true_melt_subset_spontaneous_rep2.csv
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df_true_melt_subset_spontaneous_rep20.csv
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df_true_melt_subset_spontaneous_rep21.csv
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df_true_melt_subset_spontaneous_rep22.csv
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df_true_melt_subset_spontaneous_rep23.csv
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df_true_melt_subset_spontaneous_rep25.csv
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df_true_melt_subset_spontaneous_rep26.csv
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df_true_melt_subset_spontaneous_rep27.csv
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df_true_melt_subset_spontaneous_rep28.csv
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df_true_melt_subset_spontaneous_rep32.csv
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extrinsic_df_null_zscores_i_c_melt_subset_spontaneous_rep7.csv
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extrinsic_df_null_zscores_i_c_melt_subset_spontaneous_rep80.csv
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extrinsic_df_null_zscores_i_c_melt_subset_spontaneous_rep99.csv
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extrinsic_df_true_melt_subset_spontaneous_rep0.csv
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extrinsic_df_true_melt_subset_spontaneous_rep1.csv
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extrinsic_df_true_melt_subset_spontaneous_rep10.csv
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extrinsic_df_true_melt_subset_spontaneous_rep11.csv
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extrinsic_df_true_melt_subset_spontaneous_rep12.csv
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extrinsic_df_true_melt_subset_spontaneous_rep13.csv
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extrinsic_df_true_melt_subset_spontaneous_rep14.csv
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extrinsic_df_true_melt_subset_spontaneous_rep15.csv
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extrinsic_df_true_melt_subset_spontaneous_rep16.csv
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extrinsic_df_true_melt_subset_spontaneous_rep17.csv
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extrinsic_df_true_melt_subset_spontaneous_rep18.csv
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extrinsic_df_true_melt_subset_spontaneous_rep19.csv
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extrinsic_df_true_melt_subset_spontaneous_rep2.csv
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extrinsic_df_true_melt_subset_spontaneous_rep20.csv
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extrinsic_df_true_melt_subset_spontaneous_rep21.csv
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extrinsic_df_true_melt_subset_spontaneous_rep22.csv
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extrinsic_df_true_melt_subset_spontaneous_rep23.csv
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extrinsic_df_true_melt_subset_spontaneous_rep24.csv
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extrinsic_df_true_melt_subset_spontaneous_rep25.csv
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extrinsic_df_true_melt_subset_spontaneous_rep26.csv
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extrinsic_df_true_melt_subset_spontaneous_rep27.csv
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extrinsic_df_true_melt_subset_spontaneous_rep28.csv
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extrinsic_df_true_melt_subset_spontaneous_rep29.csv
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extrinsic_df_true_melt_subset_spontaneous_rep3.csv
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extrinsic_df_true_melt_subset_spontaneous_rep30.csv
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extrinsic_df_true_melt_subset_spontaneous_rep31.csv
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extrinsic_df_true_melt_subset_spontaneous_rep32.csv
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extrinsic_df_true_melt_subset_spontaneous_rep33.csv
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extrinsic_df_true_melt_subset_spontaneous_rep34.csv
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extrinsic_df_true_melt_subset_spontaneous_rep35.csv
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extrinsic_df_true_melt_subset_spontaneous_rep36.csv
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extrinsic_df_true_melt_subset_spontaneous_rep37.csv
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extrinsic_df_true_melt_subset_spontaneous_rep38.csv
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extrinsic_df_true_melt_subset_spontaneous_rep39.csv
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extrinsic_df_true_melt_subset_spontaneous_rep4.csv
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extrinsic_df_true_melt_subset_spontaneous_rep40.csv
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extrinsic_df_true_melt_subset_spontaneous_rep41.csv
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extrinsic_df_true_melt_subset_spontaneous_rep42.csv
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extrinsic_df_true_melt_subset_spontaneous_rep43.csv
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extrinsic_df_true_melt_subset_spontaneous_rep44.csv
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extrinsic_df_true_melt_subset_spontaneous_rep45.csv
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extrinsic_df_true_melt_subset_spontaneous_rep46.csv
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extrinsic_df_true_melt_subset_spontaneous_rep47.csv
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extrinsic_df_true_melt_subset_spontaneous_rep48.csv
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extrinsic_df_true_melt_subset_spontaneous_rep49.csv
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extrinsic_df_true_melt_subset_spontaneous_rep5.csv
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extrinsic_df_true_melt_subset_spontaneous_rep50.csv
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extrinsic_df_true_melt_subset_spontaneous_rep51.csv
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extrinsic_df_true_melt_subset_spontaneous_rep52.csv
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extrinsic_df_true_melt_subset_spontaneous_rep53.csv
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extrinsic_df_true_melt_subset_spontaneous_rep54.csv
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extrinsic_df_true_melt_subset_spontaneous_rep55.csv
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extrinsic_df_true_melt_subset_spontaneous_rep56.csv
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extrinsic_df_true_melt_subset_spontaneous_rep57.csv
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extrinsic_df_true_melt_subset_spontaneous_rep58.csv
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extrinsic_df_true_melt_subset_spontaneous_rep59.csv
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extrinsic_df_true_melt_subset_spontaneous_rep6.csv
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extrinsic_df_true_melt_subset_spontaneous_rep60.csv
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extrinsic_df_true_melt_subset_spontaneous_rep61.csv
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extrinsic_df_true_melt_subset_spontaneous_rep62.csv
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extrinsic_df_true_melt_subset_spontaneous_rep63.csv
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extrinsic_df_true_melt_subset_spontaneous_rep64.csv
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extrinsic_df_true_melt_subset_spontaneous_rep65.csv
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extrinsic_df_true_melt_subset_spontaneous_rep66.csv
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extrinsic_df_true_melt_subset_spontaneous_rep67.csv
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extrinsic_df_true_melt_subset_spontaneous_rep68.csv
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extrinsic_df_true_melt_subset_spontaneous_rep69.csv
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extrinsic_df_true_melt_subset_spontaneous_rep7.csv
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extrinsic_df_true_melt_subset_spontaneous_rep70.csv
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extrinsic_df_true_melt_subset_spontaneous_rep71.csv
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extrinsic_df_true_melt_subset_spontaneous_rep72.csv
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extrinsic_df_true_melt_subset_spontaneous_rep73.csv
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extrinsic_df_true_melt_subset_spontaneous_rep74.csv
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extrinsic_df_true_melt_subset_spontaneous_rep75.csv
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extrinsic_df_true_melt_subset_spontaneous_rep76.csv
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extrinsic_df_true_melt_subset_spontaneous_rep77.csv
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extrinsic_df_true_melt_subset_spontaneous_rep78.csv
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extrinsic_df_true_melt_subset_spontaneous_rep79.csv
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extrinsic_df_true_melt_subset_spontaneous_rep8.csv
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extrinsic_df_true_melt_subset_spontaneous_rep80.csv
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extrinsic_df_true_melt_subset_spontaneous_rep81.csv
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extrinsic_df_true_melt_subset_spontaneous_rep82.csv
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extrinsic_df_true_melt_subset_spontaneous_rep83.csv
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extrinsic_df_true_melt_subset_spontaneous_rep84.csv
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extrinsic_df_true_melt_subset_spontaneous_rep85.csv
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extrinsic_df_true_melt_subset_spontaneous_rep86.csv
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extrinsic_df_true_melt_subset_spontaneous_rep87.csv
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extrinsic_df_true_melt_subset_spontaneous_rep88.csv
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extrinsic_df_true_melt_subset_spontaneous_rep89.csv
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extrinsic_df_true_melt_subset_spontaneous_rep9.csv
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extrinsic_df_true_melt_subset_spontaneous_rep90.csv
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extrinsic_df_true_melt_subset_spontaneous_rep91.csv
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extrinsic_df_true_melt_subset_spontaneous_rep92.csv
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extrinsic_df_true_melt_subset_spontaneous_rep93.csv
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extrinsic_df_true_melt_subset_spontaneous_rep94.csv
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extrinsic_df_true_melt_subset_spontaneous_rep95.csv
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extrinsic_df_true_melt_subset_spontaneous_rep96.csv
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extrinsic_df_true_melt_subset_spontaneous_rep97.csv
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extrinsic_df_true_melt_subset_spontaneous_rep98.csv
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extrinsic_df_true_melt_subset_spontaneous_rep99.csv
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extrinsic_model.zip
686.7 kB
mouse_blastocyst.txt
3.2 kB
mouse_blastocyst_inside.txt
832 Bytes
mouse_blastocyst_outside.txt
2.2 kB
predet_states_model
df_melt_100resamples_subset_doublet_trees50000_rep0.csv
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df_melt_100resamples_subset_doublet_trees50000_rep1.csv
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df_melt_100resamples_subset_doublet_trees50000_rep2.csv
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df_melt_100resamples_subset_doublet_trees50000_rep3.csv
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df_melt_100resamples_subset_doublet_trees50000_rep4.csv
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df_melt_100resamples_subset_doublet_trees50000_rep6.csv
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df_melt_100resamples_subset_doublet_trees50000_rep7.csv
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df_melt_100resamples_subset_doublet_trees50000_rep8.csv
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df_melt_100resamples_subset_doublet_trees50000_rep9.csv
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df_melt_100resamples_subset_doublet_trees5000_rep0.csv
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df_melt_100resamples_subset_doublet_trees5000_rep1.csv
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df_melt_100resamples_subset_doublet_trees5000_rep2.csv
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df_melt_100resamples_subset_doublet_trees5000_rep3.csv
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df_melt_100resamples_subset_doublet_trees5000_rep8.csv
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df_melt_100resamples_subset_doublet_trees5000_rep9.csv
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df_melt_100resamples_subset_doublet_trees500_rep0.csv
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df_melt_100resamples_subset_doublet_trees500_rep1.csv
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df_melt_100resamples_subset_doublet_trees500_rep2.csv
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df_melt_100resamples_subset_doublet_trees500_rep3.csv
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df_melt_100resamples_subset_doublet_trees500_rep6.csv
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df_melt_100resamples_subset_doublet_trees500_rep8.csv
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df_melt_100resamples_subset_doublet_trees500_rep9.csv
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df_melt_100resamples_subset_doublet_trees50_rep0.csv
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df_melt_100resamples_subset_doublet_trees50_rep1.csv
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df_melt_100resamples_subset_doublet_trees50_rep2.csv
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df_melt_100resamples_subset_doublet_trees50_rep3.csv
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df_melt_100resamples_subset_doublet_trees50_rep4.csv
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df_melt_100resamples_subset_doublet_trees50_rep5.csv
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df_melt_100resamples_subset_doublet_trees50_rep6.csv
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df_melt_100resamples_subset_doublet_trees50_rep7.csv
72.3 kB
df_melt_100resamples_subset_doublet_trees50_rep8.csv
72.0 kB
df_melt_100resamples_subset_octet_trees50000_rep0.csv
286.5 kB
df_melt_100resamples_subset_octet_trees50000_rep1.csv
286.5 kB
df_melt_100resamples_subset_octet_trees50000_rep2.csv
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df_melt_100resamples_subset_octet_trees50000_rep3.csv
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df_melt_100resamples_subset_octet_trees50000_rep5.csv
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df_melt_100resamples_subset_octet_trees50000_rep8.csv
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df_melt_100resamples_subset_octet_trees50000_rep9.csv
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df_melt_100resamples_subset_octet_trees5000_rep8.csv
285.7 kB
df_melt_100resamples_subset_octet_trees5000_rep9.csv
285.7 kB
df_melt_100resamples_subset_octet_trees500_rep8.csv
285.7 kB
df_melt_100resamples_subset_octet_trees500_rep9.csv
285.7 kB
df_melt_100resamples_subset_octet_trees50_rep0.csv
285.9 kB
df_melt_100resamples_subset_octet_trees50_rep1.csv
285.9 kB
df_melt_100resamples_subset_octet_trees50_rep2.csv
285.7 kB
df_melt_100resamples_subset_octet_trees50_rep3.csv
285.9 kB
df_melt_100resamples_subset_octet_trees50_rep4.csv
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df_melt_100resamples_subset_octet_trees50_rep5.csv
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df_melt_100resamples_subset_octet_trees50_rep6.csv
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df_melt_100resamples_subset_octet_trees50_rep7.csv
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df_melt_100resamples_subset_octet_trees50_rep8.csv
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df_melt_100resamples_subset_octet_trees50_rep9.csv
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df_melt_100resamples_subset_quartet_trees50000_rep8.csv
174.3 kB
df_melt_100resamples_subset_quartet_trees50000_rep9.csv
174.3 kB
df_melt_100resamples_subset_quartet_trees5000_rep0.csv
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df_melt_100resamples_subset_quartet_trees5000_rep1.csv
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df_melt_100resamples_subset_quartet_trees5000_rep2.csv
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df_melt_100resamples_subset_quartet_trees5000_rep3.csv
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df_melt_100resamples_subset_quartet_trees5000_rep4.csv
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df_melt_100resamples_subset_quartet_trees5000_rep5.csv
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df_melt_100resamples_subset_quartet_trees5000_rep6.csv
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df_melt_100resamples_subset_quartet_trees5000_rep7.csv
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df_melt_100resamples_subset_quartet_trees500_rep8.csv
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df_melt_100resamples_subset_quartet_trees500_rep9.csv
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df_melt_100resamples_subset_quartet_trees50_rep8.csv
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df_melt_100resamples_subset_quartet_trees50_rep9.csv
177.4 kB
df_melt_subset_doublet_trees50000_rep0.csv
798.9 kB
df_melt_subset_doublet_trees50000_rep1.csv
798.9 kB
df_melt_subset_doublet_trees50000_rep2.csv
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df_melt_subset_doublet_trees50000_rep3.csv
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df_melt_subset_doublet_trees50000_rep4.csv
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df_melt_subset_doublet_trees50000_rep5.csv
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df_melt_subset_doublet_trees50000_rep6.csv
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df_melt_subset_doublet_trees50000_rep7.csv
798.9 kB
df_melt_subset_doublet_trees5000_rep0.csv
762.9 kB
df_melt_subset_doublet_trees5000_rep1.csv
762.9 kB
df_melt_subset_doublet_trees5000_rep2.csv
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df_melt_subset_doublet_trees5000_rep3.csv
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df_melt_subset_doublet_trees5000_rep4.csv
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df_melt_subset_doublet_trees5000_rep5.csv
762.9 kB
df_melt_subset_doublet_trees5000_rep6.csv
762.9 kB
df_melt_subset_doublet_trees5000_rep7.csv
762.9 kB
df_melt_subset_doublet_trees500_rep0.csv
724.7 kB
df_melt_subset_doublet_trees500_rep1.csv
724.7 kB
df_melt_subset_doublet_trees500_rep2.csv
724.5 kB
df_melt_subset_doublet_trees500_rep3.csv
725.7 kB
df_melt_subset_doublet_trees500_rep4.csv
726.2 kB
df_melt_subset_doublet_trees500_rep5.csv
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df_melt_subset_doublet_trees500_rep6.csv
724.9 kB
df_melt_subset_doublet_trees500_rep7.csv
725.1 kB
df_melt_subset_doublet_trees50_rep0.csv
757.0 kB
df_melt_subset_doublet_trees50_rep1.csv
754.6 kB
df_melt_subset_doublet_trees50_rep2.csv
755.0 kB
df_melt_subset_doublet_trees50_rep3.csv
760.0 kB
df_melt_subset_doublet_trees50_rep4.csv
756.9 kB
df_melt_subset_doublet_trees50_rep5.csv
755.8 kB
df_melt_subset_doublet_trees50_rep6.csv
757.7 kB
df_melt_subset_doublet_trees50_rep7.csv
759.0 kB
df_melt_subset_doublet_trees50_rep8.csv
756.2 kB
df_melt_subset_octet_trees50000_rep0.csv
2.9 MB
df_melt_subset_octet_trees50000_rep1.csv
2.9 MB
df_melt_subset_octet_trees50000_rep2.csv
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df_melt_subset_octet_trees50000_rep3.csv
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df_melt_subset_octet_trees50000_rep4.csv
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df_melt_subset_octet_trees50000_rep5.csv
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df_melt_subset_octet_trees50000_rep6.csv
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df_melt_subset_octet_trees50000_rep7.csv
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df_melt_subset_octet_trees50000_rep8.csv
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df_melt_subset_octet_trees5000_rep8.csv
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df_melt_subset_octet_trees5000_rep9.csv
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df_melt_subset_octet_trees500_rep0.csv
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df_melt_subset_octet_trees500_rep1.csv
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df_melt_subset_octet_trees500_rep2.csv
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df_melt_subset_octet_trees500_rep3.csv
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df_melt_subset_octet_trees500_rep4.csv
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df_melt_subset_octet_trees500_rep5.csv
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df_melt_subset_octet_trees500_rep6.csv
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df_melt_subset_octet_trees500_rep7.csv
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df_melt_subset_octet_trees50_rep0.csv
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df_melt_subset_octet_trees50_rep1.csv
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df_melt_subset_octet_trees50_rep2.csv
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df_melt_subset_octet_trees50_rep3.csv
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df_melt_subset_octet_trees50_rep6.csv
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df_melt_subset_octet_trees50_rep7.csv
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df_melt_subset_octet_trees50_rep8.csv
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df_melt_subset_octet_trees50_rep9.csv
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df_melt_subset_quartet_trees50000_rep2.csv
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df_melt_subset_quartet_trees50000_rep4.csv
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df_melt_subset_quartet_trees50000_rep5.csv
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df_melt_subset_quartet_trees50000_rep6.csv
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df_melt_subset_quartet_trees50000_rep7.csv
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df_melt_subset_quartet_trees50000_rep8.csv
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df_melt_subset_quartet_trees50000_rep9.csv
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df_melt_subset_quartet_trees5000_rep1.csv
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df_melt_subset_quartet_trees5000_rep4.csv
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df_melt_subset_quartet_trees5000_rep5.csv
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df_melt_subset_quartet_trees5000_rep6.csv
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df_melt_subset_quartet_trees5000_rep7.csv
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df_melt_subset_quartet_trees5000_rep8.csv
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df_melt_subset_quartet_trees5000_rep9.csv
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df_melt_subset_quartet_trees500_rep0.csv
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df_melt_subset_quartet_trees500_rep1.csv
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df_melt_subset_quartet_trees500_rep2.csv
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df_melt_subset_quartet_trees500_rep3.csv
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df_melt_subset_quartet_trees500_rep4.csv
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df_melt_subset_quartet_trees500_rep5.csv
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df_melt_subset_quartet_trees500_rep6.csv
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df_melt_subset_quartet_trees500_rep7.csv
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df_melt_subset_quartet_trees50_rep8.csv
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df_melt_subset_quartet_trees50_rep9.csv
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df_null_zscores_i_c_melt_100resamples_subset_doublet_trees50000_rep1.csv
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df_null_zscores_i_c_melt_100resamples_subset_doublet_trees50000_rep6.csv
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df_null_zscores_i_c_melt_100resamples_subset_doublet_trees50000_rep7.csv
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df_null_zscores_i_c_melt_100resamples_subset_doublet_trees50000_rep9.csv
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df_null_zscores_i_c_melt_100resamples_subset_doublet_trees5000_rep8.csv
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df_null_zscores_i_c_melt_100resamples_subset_doublet_trees500_rep4.csv
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df_null_zscores_i_c_melt_100resamples_subset_doublet_trees500_rep5.csv
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df_null_zscores_i_c_melt_100resamples_subset_doublet_trees500_rep6.csv
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df_null_zscores_i_c_melt_100resamples_subset_doublet_trees50_rep2.csv
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df_null_zscores_i_c_melt_100resamples_subset_doublet_trees50_rep3.csv
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df_null_zscores_i_c_melt_100resamples_subset_doublet_trees50_rep4.csv
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df_null_zscores_i_c_melt_100resamples_subset_doublet_trees50_rep5.csv
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df_null_zscores_i_c_melt_100resamples_subset_doublet_trees50_rep6.csv
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df_null_zscores_i_c_melt_100resamples_subset_doublet_trees50_rep7.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees5000_rep0.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees5000_rep1.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees5000_rep2.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees5000_rep3.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees5000_rep4.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees5000_rep9.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees500_rep2.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees500_rep3.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees500_rep4.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees500_rep5.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees500_rep6.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees500_rep7.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees50_rep0.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees50_rep1.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees50_rep2.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees50_rep3.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees50_rep4.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees50_rep5.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees50_rep6.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees50_rep7.csv
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df_null_zscores_i_c_melt_100resamples_subset_octet_trees50_rep9.csv
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224.4 kB
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df_null_zscores_i_c_melt_100resamples_subset_quartet_trees50000_rep3.csv
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df_null_zscores_i_c_melt_100resamples_subset_quartet_trees50000_rep5.csv
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df_null_zscores_i_c_melt_100resamples_subset_quartet_trees50000_rep6.csv
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df_null_zscores_i_c_melt_100resamples_subset_quartet_trees5000_rep0.csv
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df_null_zscores_i_c_melt_100resamples_subset_quartet_trees5000_rep2.csv
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df_null_zscores_i_c_melt_100resamples_subset_quartet_trees5000_rep3.csv
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df_null_zscores_i_c_melt_100resamples_subset_quartet_trees5000_rep4.csv
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df_null_zscores_i_c_melt_100resamples_subset_quartet_trees5000_rep5.csv
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df_null_zscores_i_c_melt_100resamples_subset_quartet_trees5000_rep6.csv
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df_null_zscores_i_c_melt_100resamples_subset_quartet_trees500_rep8.csv
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df_null_zscores_i_c_melt_100resamples_subset_quartet_trees500_rep9.csv
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df_null_zscores_i_c_melt_100resamples_subset_quartet_trees50_rep0.csv
224.4 kB
df_null_zscores_i_c_melt_100resamples_subset_quartet_trees50_rep1.csv
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df_null_zscores_i_c_melt_100resamples_subset_quartet_trees50_rep2.csv
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df_null_zscores_i_c_melt_100resamples_subset_quartet_trees50_rep3.csv
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df_null_zscores_i_c_melt_100resamples_subset_quartet_trees50_rep8.csv
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df_null_zscores_i_c_melt_100resamples_subset_quartet_trees50_rep9.csv
224.4 kB
df_null_zscores_i_c_melt_subset_doublet_trees50000_rep0.csv
126.2 kB
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df_null_zscores_i_c_melt_subset_doublet_trees50000_rep2.csv
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df_null_zscores_i_c_melt_subset_doublet_trees50000_rep3.csv
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df_null_zscores_i_c_melt_subset_doublet_trees5000_rep8.csv
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df_null_zscores_i_c_melt_subset_doublet_trees500_rep2.csv
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df_null_zscores_i_c_melt_subset_doublet_trees500_rep3.csv
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df_null_zscores_i_c_melt_subset_doublet_trees50_rep2.csv
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df_null_zscores_i_c_melt_subset_doublet_trees50_rep3.csv
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df_null_zscores_i_c_melt_subset_doublet_trees50_rep4.csv
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df_null_zscores_i_c_melt_subset_doublet_trees50_rep5.csv
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df_null_zscores_i_c_melt_subset_doublet_trees50_rep6.csv
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df_null_zscores_i_c_melt_subset_doublet_trees50_rep7.csv
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df_null_zscores_i_c_melt_subset_octet_trees50000_rep0.csv
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df_null_zscores_i_c_melt_subset_octet_trees50000_rep2.csv
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df_null_zscores_i_c_melt_subset_octet_trees50000_rep3.csv
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df_null_zscores_i_c_melt_subset_octet_trees50000_rep4.csv
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df_null_zscores_i_c_melt_subset_octet_trees50000_rep8.csv
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df_null_zscores_i_c_melt_subset_octet_trees5000_rep8.csv
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df_null_zscores_i_c_melt_subset_octet_trees5000_rep9.csv
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df_null_zscores_i_c_melt_subset_octet_trees500_rep8.csv
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df_null_zscores_i_c_melt_subset_octet_trees500_rep9.csv
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df_null_zscores_i_c_melt_subset_octet_trees50_rep0.csv
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df_null_zscores_i_c_melt_subset_octet_trees50_rep2.csv
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df_null_zscores_i_c_melt_subset_octet_trees50_rep3.csv
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df_null_zscores_i_c_melt_subset_octet_trees50_rep4.csv
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df_null_zscores_i_c_melt_subset_quartet_trees50000_rep0.csv
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df_null_zscores_i_c_melt_subset_quartet_trees50000_rep3.csv
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df_null_zscores_i_c_melt_subset_quartet_trees50000_rep5.csv
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df_null_zscores_i_c_melt_subset_quartet_trees5000_rep0.csv
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df_null_zscores_i_c_melt_subset_quartet_trees5000_rep2.csv
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df_null_zscores_i_c_melt_subset_quartet_trees5000_rep3.csv
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df_null_zscores_i_c_melt_subset_quartet_trees5000_rep4.csv
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df_null_zscores_i_c_melt_subset_quartet_trees5000_rep5.csv
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df_null_zscores_i_c_melt_subset_quartet_trees5000_rep6.csv
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df_null_zscores_i_c_melt_subset_quartet_trees5000_rep7.csv
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df_null_zscores_i_c_melt_subset_quartet_trees5000_rep9.csv
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df_null_zscores_i_c_melt_subset_quartet_trees500_rep8.csv
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df_null_zscores_i_c_melt_subset_quartet_trees500_rep9.csv
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df_null_zscores_i_c_melt_subset_quartet_trees50_rep8.csv
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df_null_zscores_i_c_melt_subset_quartet_trees50_rep9.csv
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df_true_melt_subset_doublet_trees50000_rep0.csv
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df_true_melt_subset_doublet_trees500_rep0.csv
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df_true_melt_subset_doublet_trees50_rep7.csv
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df_true_melt_subset_octet_trees50000_rep0.csv
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df_true_melt_subset_octet_trees50000_rep1.csv
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df_true_melt_subset_octet_trees50000_rep2.csv
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df_true_melt_subset_octet_trees50000_rep3.csv
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df_true_melt_subset_octet_trees50000_rep6.csv
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df_true_melt_subset_octet_trees50000_rep7.csv
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df_true_melt_subset_octet_trees5000_rep8.csv
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df_true_melt_subset_octet_trees5000_rep9.csv
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df_true_melt_subset_octet_trees500_rep2.csv
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df_true_melt_subset_octet_trees500_rep8.csv
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df_true_melt_subset_octet_trees500_rep9.csv
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df_true_melt_subset_octet_trees50_rep0.csv
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df_true_melt_subset_octet_trees50_rep1.csv
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df_true_melt_subset_octet_trees50_rep5.csv
6.3 kB
df_true_melt_subset_octet_trees50_rep6.csv
6.2 kB
df_true_melt_subset_octet_trees50_rep7.csv
6.2 kB
df_true_melt_subset_quartet_trees50000_rep4.csv
6.8 kB
df_true_melt_subset_quartet_trees50000_rep5.csv
6.8 kB
df_true_melt_subset_quartet_trees50000_rep6.csv
6.8 kB
df_true_melt_subset_quartet_trees50000_rep7.csv
6.8 kB
df_true_melt_subset_quartet_trees50000_rep8.csv
6.8 kB
df_true_melt_subset_quartet_trees50000_rep9.csv
6.8 kB
df_true_melt_subset_quartet_trees5000_rep4.csv
6.8 kB
df_true_melt_subset_quartet_trees5000_rep5.csv
6.7 kB
df_true_melt_subset_quartet_trees5000_rep6.csv
6.7 kB
df_true_melt_subset_quartet_trees5000_rep7.csv
6.8 kB
df_true_melt_subset_quartet_trees5000_rep8.csv
6.8 kB
df_true_melt_subset_quartet_trees5000_rep9.csv
6.7 kB
df_true_melt_subset_quartet_trees500_rep0.csv
7.6 kB
df_true_melt_subset_quartet_trees500_rep1.csv
7.1 kB
df_true_melt_subset_quartet_trees500_rep2.csv
7.1 kB
df_true_melt_subset_quartet_trees500_rep3.csv
7.6 kB
df_true_melt_subset_quartet_trees500_rep4.csv
7.5 kB
df_true_melt_subset_quartet_trees500_rep5.csv
7.6 kB
df_true_melt_subset_quartet_trees500_rep6.csv
7.5 kB
df_true_melt_subset_quartet_trees500_rep7.csv
7.1 kB
df_true_melt_subset_quartet_trees50_rep8.csv
7.5 kB
df_true_melt_subset_quartet_trees50_rep9.csv
8.1 kB
dfs_c_doublet_trees50000_rep8.csv
212.9 kB
dfs_c_doublet_trees50000_rep9.csv
212.9 kB
dfs_c_doublet_trees5000_rep0.csv
176.9 kB
dfs_c_doublet_trees5000_rep1.csv
176.9 kB
dfs_c_doublet_trees5000_rep2.csv
176.9 kB
dfs_c_doublet_trees5000_rep3.csv
176.9 kB
dfs_c_doublet_trees5000_rep4.csv
176.9 kB
dfs_c_doublet_trees5000_rep5.csv
176.9 kB
dfs_c_doublet_trees5000_rep6.csv
176.9 kB
dfs_c_doublet_trees5000_rep7.csv
176.9 kB
dfs_c_doublet_trees500_rep8.csv
139.4 kB
dfs_c_doublet_trees500_rep9.csv
137.7 kB
dfs_c_doublet_trees50_rep0.csv
106.8 kB
dfs_c_doublet_trees50_rep1.csv
99.3 kB
dfs_c_doublet_trees50_rep2.csv
108.9 kB
dfs_c_doublet_trees50_rep3.csv
102.8 kB
dfs_c_doublet_trees50_rep4.csv
102.7 kB
dfs_c_doublet_trees50_rep5.csv
99.5 kB
dfs_c_doublet_trees50_rep6.csv
101.4 kB
dfs_c_doublet_trees50_rep7.csv
102.8 kB
dfs_c_octet_trees50000_rep8.csv
890.9 MB
dfs_c_octet_trees50000_rep9.csv
890.9 MB
dfs_c_octet_trees5000_rep3.csv
890.8 MB
dfs_c_octet_trees5000_rep4.csv
890.8 MB
dfs_c_octet_trees5000_rep5.csv
890.8 MB
dfs_c_octet_trees5000_rep6.csv
890.8 MB
dfs_c_octet_trees5000_rep7.csv
890.8 MB
dfs_c_octet_trees5000_rep8.csv
890.8 MB
dfs_c_octet_trees5000_rep9.csv
890.8 MB
dfs_c_octet_trees500_rep0.csv
890.8 MB
dfs_c_octet_trees500_rep1.csv
890.8 MB
dfs_c_octet_trees500_rep2.csv
890.8 MB
dfs_c_octet_trees500_rep3.csv
890.8 MB
dfs_c_octet_trees500_rep4.csv
890.8 MB
dfs_c_octet_trees500_rep5.csv
890.8 MB
dfs_c_octet_trees500_rep6.csv
890.8 MB
dfs_c_octet_trees500_rep7.csv
890.8 MB
dfs_c_octet_trees50_rep0.csv
890.8 MB
dfs_c_octet_trees50_rep1.csv
890.8 MB
dfs_c_octet_trees50_rep2.csv
890.8 MB
dfs_c_octet_trees50_rep3.csv
890.8 MB
dfs_c_octet_trees50_rep4.csv
890.8 MB
dfs_c_octet_trees50_rep5.csv
890.8 MB
dfs_c_octet_trees50_rep6.csv
890.8 MB
dfs_c_octet_trees50_rep7.csv
890.8 MB
dfs_c_quartet_trees50000_rep0.csv
1.5 MB
dfs_c_quartet_trees50000_rep1.csv
1.5 MB
dfs_c_quartet_trees50000_rep2.csv
1.5 MB
dfs_c_quartet_trees50000_rep3.csv
1.5 MB
dfs_c_quartet_trees50000_rep4.csv
1.5 MB
dfs_c_quartet_trees50000_rep5.csv
1.5 MB
dfs_c_quartet_trees50000_rep6.csv
1.5 MB
dfs_c_quartet_trees50000_rep7.csv
1.5 MB
dfs_c_quartet_trees50000_rep8.csv
1.5 MB
dfs_c_quartet_trees5000_rep0.csv
1.5 MB
dfs_c_quartet_trees5000_rep4.csv
1.5 MB
dfs_c_quartet_trees5000_rep5.csv
1.5 MB
dfs_c_quartet_trees5000_rep6.csv
1.5 MB
dfs_c_quartet_trees5000_rep7.csv
1.5 MB
dfs_c_quartet_trees5000_rep8.csv
1.5 MB
dfs_c_quartet_trees5000_rep9.csv
1.5 MB
dfs_c_quartet_trees500_rep0.csv
2.1 MB
dfs_c_quartet_trees500_rep1.csv
2.2 MB
dfs_c_quartet_trees500_rep2.csv
2.0 MB
dfs_c_quartet_trees500_rep3.csv
2.1 MB
dfs_c_quartet_trees500_rep7.csv
2.1 MB
dfs_c_quartet_trees500_rep8.csv
2.2 MB
dfs_c_quartet_trees500_rep9.csv
2.2 MB
dfs_c_quartet_trees50_rep2.csv
2.7 MB
dfs_c_quartet_trees50_rep4.csv
2.7 MB
dfs_c_quartet_trees50_rep5.csv
2.7 MB
dfs_c_quartet_trees50_rep6.csv
2.7 MB
dfs_c_quartet_trees50_rep7.csv
2.7 MB
dfs_c_quartet_trees50_rep8.csv
2.7 MB
dfs_c_quartet_trees50_rep9.csv
2.7 MB
trees_trees50000_rep0.txt
3.7 MB
trees_trees50000_rep1.txt
3.7 MB
trees_trees50000_rep2.txt
3.7 MB
trees_trees50000_rep3.txt
3.7 MB
trees_trees50000_rep4.txt
3.7 MB
trees_trees50000_rep5.txt
3.7 MB
trees_trees50000_rep6.txt
3.7 MB
trees_trees50000_rep7.txt
3.7 MB
trees_trees5000_rep8.txt
370.1 kB
trees_trees5000_rep9.txt
370.4 kB
trees_trees500_rep0.txt
36.6 kB
trees_trees500_rep1.txt
36.1 kB
trees_trees500_rep2.txt
38.1 kB
trees_trees500_rep3.txt
37.3 kB
trees_trees500_rep8.txt
37.6 kB
trees_trees500_rep9.txt
35.3 kB
trees_trees50_rep0.txt
4.1 kB
trees_trees50_rep1.txt
3.5 kB
trees_trees50_rep2.txt
3.9 kB
trees_trees50_rep3.txt
4.2 kB
trees_trees50_rep4.txt
3.9 kB
trees_trees50_rep5.txt
3.6 kB
trees_trees50_rep6.txt
3.9 kB
trees_trees50_rep7.txt
4.1 kB
predet_states_model.zip
129.3 MB
rat_retina.txt
1.5 kB
simulation_correlation_data
simulation_correlation_data.zip
7.1 MB
zebrafish_retina.txt
1.0 kB
zebrafish_retina_middle.txt
260 Bytes
zebrafish_retina_nasal.txt
313 Bytes
zebrafish_retina_temporal.txt
457 Bytes
Figures
.DS_Store
10.2 kB
Figure1.pdf
217.5 kB
Figure2.pdf
182.0 kB
Figure3.pdf
355.9 kB
Figure4.pdf
474.2 kB
Figure5.pdf
461.1 kB
Figure6.pdf
397.5 kB
Figure7.pdf
583.3 kB
FigureS1.pdf
596.1 kB
FigureS2.pdf
247.5 kB
FigureS3.pdf
262.5 kB
FigureS4.pdf
449.5 kB
FigureS5.pdf
334.8 kB
FigureS6.pdf
279.7 kB
FigureS7.pdf
218.9 kB
GraphicalAbstract.pdf
135.2 kB
README.md
1.2 kB
Scripts
.DS_Store
6.1 kB
Figure3.ipynb
830.4 kB
Figure3_comp_prog_model_data_generation.py
19.6 kB
Figure4.ipynb
2.0 MB
Figure5.ipynb
1.7 MB
Figure6.ipynb
1.7 MB
Figure7B.ipynb
113.5 kB
Figure7C.ipynb
107.5 kB
FigureS1.ipynb
1.3 MB
FigureS1_predet_states_model_data_generation.py
10.1 kB
FigureS2A-C.ipynb
416.6 kB
FigureS2D-G.ipynb
510.0 kB
FigureS2H.ipynb
74.0 kB
FigureS3.ipynb
254.6 kB
FigureS3_extrinsic_data_generation.py
6.6 kB
FigureS3_null_data_generation.py
5.0 kB
FigureS4.ipynb
2.1 MB
FigureS5BC.ipynb
342.6 kB
FigureS5BD_RR_data_generation.py
3.8 kB
FigureS5CE_MM_data_generation.py
3.8 kB
FigureS5DE.ipynb
474.5 kB
FigureS6.ipynb
1.6 MB
FigureS7.ipynb
111.7 kB