Published 2016 | Version v1
Dataset Open

Thermococcus koakarensis

  • 1. ROR icon California Institute of Technology

Description

Imaging Thermococcus koakarensis flagella

Technical info

Tilt Series Date: 2016-09-19

Data Taken By: Debnath Ghosal

Species / Specimen: Thermococcus kodakarensis

Strain:

Tilt Series Settings: Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 140.0 eV/Ų, defocus: -6.0 μm, magnification: 27500x.

Microscope: Caltech Polara

Acquisition Software: UCSFTomo

Upload Method: pipeline

Processing Software Used: Raptor

Collaborators and Roles: Strain sent to us by Robert Gunsalus, UCLA. Data collected and processed by Kiwoo and Debnath Ghosal

Purification / Growth Conditions / Treatment: Standard Tk medium with starch and sulfur

Sample Preparation: 8 grids were frozen for the this strain. Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 3.5 sec. Wait time 8 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.

Attached Files

atlas10003.mrc, Tilt Series (Pixel Size 0.39 nm), 3.4 GB

Files

keyimg_dga2016-09-19-2.jpg

Files (3.5 GB)

Name Size
3.4 GB (external) Download
md5:72f8e9958d4807a0ebbeb520b1cd8f0d
18.2 MB Preview Download

Additional details

Identifiers

DOI
10.22002/mea7s-c6g28
TILT_SERIES_ID
dga2016-09-19-2

Funding

NIH
HHMI
Beckman Institute
Gordon and Betty Moore Foundation
Agouron Institute
John Templeton Foundation

Dates

Collected
2016-09-19
Created
2016-09-20
Updated
2016-09-23