Published 2019 | Version v1
Dataset Open

JV9082_K3_janelia

  • 1. ROR icon California Institute of Technology

Description

JV9082:DotF-sfGFP fusion

Technical info

<strong>Tilt Series Date:</strong> 2019-12-04</p>

<strong>Data Taken By:</strong> Debnath Ghosal</p>

<strong>Species / Specimen:</strong> Legionella pneumophila</p>

<strong>Strain:</strong> Philadelphia-1_Lp02</p>

<strong>Tilt Series Settings:</strong> Single Axis, tilt range: (-54.0°, 54.0°), step: 3.0°, constant angular increment, dosage: 90.0 eV/Ų, defocus: -3.0 μm, magnification: 26000x. </p>

<strong>Microscope:</strong> Janelia Titan</p>

<strong>Acquisition Software:</strong> SerialEM</p>

<strong>Upload Method:</strong> pipeline</p>

<strong>Processing Software Used:</strong> Raptor</p>

<strong>Collaborators and Roles:</strong> Strain sent to us by Joseph P. Vogel, Washington University School of Medicine. Data collected and processed by Debnath Ghosal.</p>

<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in AYE liquid culture with following supplements: ferric nitrate, cysteine hydrochloride and thymidine.</p>

<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 4.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Data collected at Janelia Krios (K3 camera). Mag: 26000, pixel size: 2.61A. Defocus range -2 to -4 um.</p>

External Files

Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-12-04-28/rawdata/</p>

9082_Box1_No4_S60.mrc, Tilt Series (Pixel Size 0.261 nm), 1.7 GB

<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-12-04-28/rawdata/9082_Box1_No4_S60.mrc" > <i class="download icon"></i> Download </a>

</p>

9082_Box1_No4_S60_full.rec, Reconstruction (Pixel Size 1.044 nm), 737.3 MB

<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-12-04-28/3dimage_112999/9082_Box1_No4_S60_full.rec" > <i class="download icon"></i> Download </a>

</p>

Files

keyimg_dga2019-12-04-28.jpg

Files (8.3 MB)

Name Size
md5:933642c6e3769fa74da6a8395cc10495
1.8 MB Preview Download
md5:a33c6da679431afbeb17f62ee8da640b
6.6 MB Preview Download

Additional details

Identifiers

DOI
10.22002/parwb-vms04
TILT_SERIES_ID
dga2019-12-04-28

Funding

NIH
HHMI
Beckman Institute
Gordon and Betty Moore Foundation
Agouron Institute
John Templeton Foundation

Dates

Collected
2019-12-04
Created
2020-07-06
Updated
2020-07-07