Published 2017 | Version v1
Dataset Open

Coxiella_ Verocells_28dpi

  • 1. ROR icon California Institute of Technology

Description

Coxiella burnetii Nine Mile phase II clone 4 (NMIIC4) strain. Coxiella cells purified from infected Vero cells.

Technical info

Tilt Series Date: 2017-09-25

Data Taken By: Debnath Ghosal

Species / Specimen: Coxiella burnetii

Strain: Nine Mile phase II clone 4

Tilt Series Settings: Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Ų, defocus: -7.0 μm, magnification: 27500x.

Microscope: Caltech Polara

Acquisition Software: UCSFTomo

Upload Method: pipeline

Processing Software Used: Raptor

Collaborators and Roles: Strain sent to us by Robert Heinzen. Data collected and processed by Debnath Ghosal using Caltech tomography pipeline.

Purification / Growth Conditions / Treatment: Refer to Heinzen lab.

Sample Preparation: Freezing: 100% humidity, 4µl sample, Blot force 6, blot time 4 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.T

dga2017-09-25-119_slicer19036.jpg: A flat structure on the outside cell surface and a multilayer structure beneath the inner membrane

Attached Files

Cb_vero_201709250119.mrc, Tilt Series (Pixel Size 0.39 nm), 1.7 GB

Cb_vero_201709250119_part61_7.rec, Reconstruction (Pixel Size 1.56 nm), 445.4 MB

Files

dga2017-09-25-119_slicer19036.jpg

Files (2.2 GB)

Name Size
1.7 GB (external) Download
445.4 MB (external) Download
md5:62452d8a3d91b12327343e7b6bb9d50a
284.7 kB Preview Download
md5:bc996bb118bf453c81e25d8172325fbe
1.1 MB Preview Download
md5:9d326149527e42420ea2b6655b84822b
15.3 MB Preview Download

Additional details

Identifiers

DOI
10.22002/qvjnk-sfx56
TILT_SERIES_ID
dga2017-09-25-119

Funding

NIH
HHMI
Beckman Institute
Gordon and Betty Moore Foundation
Agouron Institute
John Templeton Foundation

Dates

Collected
2017-09-25
Created
2017-09-27
Updated
2017-11-16