Caltech Tomography Archive
Published 2018 | Version v1
Dataset Open

Vibrio cholerae SAD2095 induced

Creators

  • 1. ROR icon California Institute of Technology

Description

SAD2095 (T2SS and T4 competence pili) = rpoS*, pilA S81C, lacZ::lacIq, comEA-mCherry, ΔluxO, Ptac-tfoX, Ptac-recA, ∆TCP::ZeoR, ∆MSHA::CarbR, ∆CTX::KanR, ∆pilT::TmR Ankur: "For the taxonomy ID - unfortunately the strain we sent does not have a taxonomy ID. So, you can use the generic one for V. cholerae which is "666". The strain we are working with is related to N16961, but is certainly not the same strain, so not sure if you would want to indicate that somehow? Just for reference - the strain we sent is E7946 (although it is obviously heavily modified with a number of mutations). "

Technical info

Tilt Series Date: 2018-08-14

Data Taken By: Sara Weaver

Species / Specimen: Vibrio cholerae

Strain: SAD2095

Tilt Series Settings: Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 0.0 eV/Ų, defocus: -6.0 μm, magnification: 41000x.

Microscope: Caltech Polara

Acquisition Software: SerialEM

Upload Method: pipeline

Processing Software Used: Batchruntomo

Collaborators and Roles: Strain from Ankur B Dalia ankdalia@indiana.edu, PhD, Assistant Professor, Indiana University. Cells grown, data collected by Sara Weaver

Purification / Growth Conditions / Treatment: Streaked stock on a plate. Grew up a single colony in 3 mL LB with shaking at 37˚C. The next day, subcultured 416 uL of this overnight culture into 25 mL of fresh LB+100uM IPTG + 20mM MgCl2 + 10mM CaCl2 in a 125 mL beveled glass flask and grow at 30˚C shaking for ~6 hours.

Sample Preparation: Grid SW0808B1 - Spun gold (100 µL 10 nm gold + 25 µL 5% BSA) at 15,000rpm for 20 minutes, removed supernatant. Resuspended gold beads in 20 µL liquid culture. Vitrobot RT and 95% humidity, finger flick sample immediately before taking 4 µL of gold/sample slurry on carbon/copper Quantifoil Finder grids R2/2 (EmiTech glow discharge 20 mA, 60 s) Blot force +6, blot time 3 s, no waiting time, no drain time. Plunged into ethane/propane mix.

Attached Files

0808B1_tomogram9.mrc, Tilt Series (Pixel Size 0.26 nm), 1.6 GB

0808B1_tomogram9.rec, Reconstruction (Pixel Size 1.04 nm), 1.4 GB

Files

keyimg_swj2018-08-14-38.jpg

Files (3.1 GB)

Name Size
1.6 GB (external) Download
1.4 GB (external) Download
md5:8a72a51daeae57d8a9300c69cea5c2a0
1.1 MB Preview Download
md5:819fc15ddc937522ccf8fcb2ac5516a0
27.4 MB Preview Download

Additional details

Identifiers

DOI
10.22002/rt1nd-gn731
TILT_SERIES_ID
swj2018-08-14-38

Funding

NIH
HHMI
Beckman Institute
Gordon and Betty Moore Foundation
Agouron Institute
John Templeton Foundation

Dates

Collected
2018-08-14
Created
2018-08-15
Updated
2018-08-15