Figure S14 B3.zip
Figure S14 B3
Brain B3
20200528 B5P13S3 Segmentation.ai
83.5 MB
20200601 B5P8S3 Segmentation.ai
70.5 MB
B3_corr_single.fig
357.5 kB
B3_panel_B_clones_on_brain.fig
1.8 MB
B3_panel_C_clones_in_physical_space.fig
357.4 kB
B3_panel_D_clones_on_UMAP.fig
103.0 kB
B3_panel_E_clones_in_expression_space.fig
364.6 kB
B3_panel_F_within.fig
222.3 kB
B3_panel_F_without.fig
121.1 kB
FISH data
pos13_slice3_raw
bc10f.tif
8.4 MB
bc10r.tif
8.4 MB
bc1f.tif
8.4 MB
bc1r.tif
8.4 MB
bc2f.tif
8.4 MB
bc2r.tif
8.4 MB
bc3f.tif
8.4 MB
bc3r.tif
8.4 MB
bc4f.tif
8.4 MB
bc4r.tif
8.4 MB
bc5f.tif
8.4 MB
bc5r.tif
8.4 MB
bc6f.tif
8.4 MB
bc6r.tif
8.4 MB
bc7f.tif
8.4 MB
bc7r.tif
8.4 MB
bc8f.tif
8.4 MB
bc8r.tif
8.4 MB
bc9f.tif
8.4 MB
bc9r.tif
8.4 MB
bcChAT.tif
8.4 MB
bcFru.tif
8.4 MB
bcGad1.tif
8.4 MB
bcSerT.tif
8.4 MB
bcTH.tif
8.4 MB
bcTbh.tif
8.4 MB
bcVGlut.tif
8.4 MB
bccfp.tif
8.4 MB
bcsNPF.tif
8.4 MB
pos8_slice3_raw
bc10f.tif
8.4 MB
bc10r.tif
8.4 MB
bc1f.tif
8.4 MB
bc1r.tif
8.4 MB
bc2f.tif
8.4 MB
bc2r.tif
8.4 MB
bc3f.tif
8.4 MB
bc3r.tif
8.4 MB
bc4f.tif
8.4 MB
bc4r.tif
8.4 MB
bc5f.tif
8.4 MB
bc5r.tif
8.4 MB
bc6f.tif
8.4 MB
bc6r.tif
8.4 MB
bc7f.tif
8.4 MB
bc7r.tif
8.4 MB
bc8f.tif
8.4 MB
bc8r.tif
8.4 MB
bc9f.tif
8.4 MB
bc9r.tif
8.4 MB
bcChAT.tif
8.4 MB
bcFru.tif
8.4 MB
bcGad1.tif
8.4 MB
bcSerT.tif
8.4 MB
bcTH.tif
8.4 MB
bcTbh.tif
8.4 MB
bcVGlut.tif
8.4 MB
bccfp.tif
8.4 MB
bcsNPF.tif
8.4 MB
README Brain B3.pdf
73.3 kB
UMAP_output.txt
197.8 kB
_analysis_261_050_slice_genes.ijm
762 Bytes
analysis_259_000_make_label_image.m
421 Bytes
analysis_259_010_slice_barcodes.ijm.ijm
2.0 kB
analysis_259_020_call_barcodes.m
1.7 kB
analysis_259_021_rehyb_to_dots.m
1.6 kB
analysis_259_022_basic_alignment.m
2.1 kB
analysis_259_030_call_barcodes_from_images.m
9.1 kB
analysis_259_051_background_subtract_images.m
878 Bytes
analysis_259_060_write_output_to_file.m
975 Bytes
analysis_259_065_UMAP_clustering.py
3.2 kB
analysis_259_071_cell_distance_from_ale_table.m
3.7 kB
analysis_259_072_cell_distance_from_ale_table_multi_hist.m
4.3 kB
analysis_259_073_UMAP_percentile.m
4.2 kB
analysis_259_074_corr_single_histogram.m
4.1 kB
analysis_259_080_highlight_clones_in_umap.m
2.4 kB
brain.mat
6.6 MB
call_barcode_from_state_array.m
1.0 kB
cell_barcode_and_expression.txt
144.8 kB
clones
clones_next_brain_5.00
0000001112.png
196.8 kB
0110211211.png
196.9 kB
0111111121.png
196.8 kB
0122011201.png
198.7 kB
0222012221.png
196.8 kB
1100211211.png
196.9 kB
1110211211.png
197.6 kB
1110212111.png
196.7 kB
1110212211.png
196.8 kB
1111111112.png
196.8 kB
1111111200.png
196.8 kB
1111112110.png
196.8 kB
1111112111.png
197.2 kB
1111112122.png
196.8 kB
1112111111.png
196.8 kB
1122011201.png
196.8 kB
1122111201.png
196.9 kB
2110111101.png
196.9 kB
2110111111.png
196.8 kB
2111111111.png
196.8 kB
2111211211.png
196.8 kB
2122111100.png
196.9 kB
composite 5.00.png
510.7 kB
corr_multi_histrogram.m
4.4 kB
de2bc.m
308 Bytes
getFishDots_from_image.m
817 Bytes
imwarp_same.m
1.2 kB
loadtiff.m
5.3 kB
pos13_full
._B5P13S3 Segmentation.tif
4.1 kB
B5P13S3 Segmentation.tif
75.8 MB
all_cells_barcodes.txt
26.3 kB
im.tif
152.9 kB
im_bc10f.tif
172.2 kB
im_bc10f_shift.tif
172.2 kB
im_bc10r.tif
139.5 kB
im_bc10r_shift.tif
139.5 kB
im_bc1f.tif
204.9 kB
im_bc1f_shift.tif
204.9 kB
im_bc1r.tif
149.0 kB
im_bc1r_shift.tif
149.0 kB
im_bc2f.tif
206.7 kB
im_bc2f_shift.tif
206.7 kB
im_bc2r.tif
138.1 kB
im_bc2r_shift.tif
138.1 kB
im_bc3f.tif
166.1 kB
im_bc3f_shift.tif
166.1 kB
im_bc3r.tif
157.8 kB
im_bc3r_shift.tif
157.9 kB
im_bc4f.tif
166.6 kB
im_bc4f_shift.tif
166.6 kB
im_bc4r.tif
155.5 kB
im_bc4r_shift.tif
155.6 kB
im_bc5f.tif
166.4 kB
im_bc5f_shift.tif
166.4 kB
im_bc5r.tif
149.0 kB
im_bc5r_shift.tif
149.0 kB
im_bc6f.tif
182.7 kB
im_bc6f_shift.tif
182.7 kB
im_bc6r.tif
137.2 kB
im_bc6r_shift.tif
137.3 kB
im_bc7f.tif
422.0 kB
im_bc7f_shift.tif
421.9 kB
im_bc7r.tif
143.9 kB
im_bc7r_shift.tif
143.9 kB
im_bc8f.tif
159.1 kB
im_bc8f_shift.tif
159.1 kB
im_bc8r.tif
156.9 kB
im_bc8r_shift.tif
157.0 kB
im_bc9f.tif
159.2 kB
im_bc9f_shift.tif
159.2 kB
im_bc9r.tif
139.7 kB
im_bc9r_shift.tif
139.8 kB
label.tif
1.3 MB
labels_from_composite_0000001112.tif
277.1 kB
labels_from_composite_0110211211.tif
277.1 kB
labels_from_composite_0111111121.tif
277.1 kB
labels_from_composite_0122011201.tif
277.9 kB
labels_from_composite_0222012221.tif
277.1 kB
labels_from_composite_1100211211.tif
277.1 kB
labels_from_composite_1110211211.tif
277.3 kB
labels_from_composite_1110212111.tif
277.1 kB
labels_from_composite_1110212211.tif
277.1 kB
labels_from_composite_1111111112.tif
277.1 kB
labels_from_composite_1111111200.tif
277.1 kB
labels_from_composite_1111112110.tif
277.1 kB
labels_from_composite_1111112111.tif
277.1 kB
labels_from_composite_1111112122.tif
277.1 kB
labels_from_composite_1112111111.tif
277.1 kB
labels_from_composite_1122011201.tif
277.1 kB
labels_from_composite_1122111201.tif
277.1 kB
labels_from_composite_2110111101.tif
277.1 kB
labels_from_composite_2110111111.tif
277.1 kB
labels_from_composite_2111111111.tif
277.1 kB
labels_from_composite_2111211211.tif
277.1 kB
labels_from_composite_2122111100.tif
277.1 kB
pos8_full
._B5P8S3 Segmentation.tif
4.1 kB
B5P8S3 Segmentation.tif
75.5 MB
im.tif
141.9 kB
im_bc10f.tif
149.1 kB
im_bc10f_shift.tif
149.0 kB
im_bc10r.tif
136.8 kB
im_bc10r_shift.tif
136.8 kB
im_bc1f.tif
171.3 kB
im_bc1f_shift.tif
171.3 kB
im_bc1r.tif
140.7 kB
im_bc1r_shift.tif
140.7 kB
im_bc2f.tif
163.4 kB
im_bc2f_shift.tif
163.3 kB
im_bc2r.tif
136.9 kB
im_bc2r_shift.tif
136.9 kB
im_bc3f.tif
149.9 kB
im_bc3f_shift.tif
149.9 kB
im_bc3r.tif
140.5 kB
im_bc3r_shift.tif
140.5 kB
im_bc4f.tif
153.3 kB
im_bc4f_shift.tif
153.3 kB
im_bc4r.tif
139.2 kB
im_bc4r_shift.tif
139.2 kB
im_bc5f.tif
154.3 kB
im_bc5f_shift.tif
154.2 kB
im_bc5r.tif
144.0 kB
im_bc5r_shift.tif
144.0 kB
im_bc6f.tif
152.0 kB
im_bc6f_shift.tif
152.0 kB
im_bc6r.tif
135.1 kB
im_bc6r_shift.tif
135.1 kB
im_bc7f.tif
357.5 kB
im_bc7f_shift.tif
357.2 kB
im_bc7r.tif
139.2 kB
im_bc7r_shift.tif
139.2 kB
im_bc8f.tif
149.5 kB
im_bc8f_shift.tif
149.5 kB
im_bc8r.tif
135.9 kB
im_bc8r_shift.tif
135.9 kB
im_bc9f.tif
145.3 kB
im_bc9f_shift.tif
145.3 kB
im_bc9r.tif
140.9 kB
im_bc9r_shift.tif
140.8 kB
label.tif
458.1 kB
labels_from_composite_0000001112.tif
131.6 kB
labels_from_composite_0110211211.tif
131.6 kB
labels_from_composite_0111111121.tif
131.6 kB
labels_from_composite_0122011201.tif
131.6 kB
labels_from_composite_0222012221.tif
131.6 kB
labels_from_composite_1100211211.tif
131.6 kB
labels_from_composite_1110211211.tif
131.6 kB
labels_from_composite_1110212111.tif
131.6 kB
labels_from_composite_1110212211.tif
131.6 kB
labels_from_composite_1111111112.tif
131.6 kB
labels_from_composite_1111111200.tif
131.6 kB
labels_from_composite_1111112110.tif
131.6 kB
labels_from_composite_1111112111.tif
131.6 kB
labels_from_composite_1111112122.tif
131.6 kB
labels_from_composite_1112111111.tif
131.6 kB
labels_from_composite_1122011201.tif
131.6 kB
labels_from_composite_1122111201.tif
131.6 kB
labels_from_composite_2110111101.tif
131.6 kB
labels_from_composite_2110111111.tif
131.6 kB
labels_from_composite_2111111111.tif
131.6 kB
labels_from_composite_2111211211.tif
131.6 kB
labels_from_composite_2122111100.tif
131.6 kB
FISH data
Automation FISH target table.xlsx
68.7 kB
HybCycle_0
MMStack_Pos10.ome.tif
470.3 MB
MMStack_Pos12.ome.tif
470.3 MB
MMStack_Pos13.ome.tif
470.3 MB
MMStack_Pos14.ome.tif
470.3 MB
MMStack_Pos8.ome.tif
470.3 MB
MMStack_Pos9.ome.tif
470.3 MB
HybCycle_1
MMStack_Pos10.ome.tif
470.3 MB
MMStack_Pos12.ome.tif
470.3 MB
MMStack_Pos13.ome.tif
470.3 MB
MMStack_Pos14.ome.tif
470.3 MB
MMStack_Pos8.ome.tif
470.3 MB
MMStack_Pos9.ome.tif
470.3 MB
HybCycle_10
MMStack_Pos10.ome.tif
470.3 MB
MMStack_Pos12.ome.tif
470.3 MB
MMStack_Pos13.ome.tif
470.3 MB
MMStack_Pos14.ome.tif
470.3 MB
MMStack_Pos8.ome.tif
470.3 MB
MMStack_Pos9.ome.tif
470.3 MB
HybCycle_11
MMStack_Pos10.ome.tif
470.3 MB
MMStack_Pos12.ome.tif
470.3 MB
MMStack_Pos13.ome.tif
470.3 MB
MMStack_Pos14.ome.tif
470.3 MB
MMStack_Pos8.ome.tif
470.3 MB
MMStack_Pos9.ome.tif
470.3 MB
HybCycle_12
MMStack_Pos10.ome.tif
470.3 MB
MMStack_Pos12.ome.tif
470.3 MB
MMStack_Pos13.ome.tif
470.3 MB
MMStack_Pos14.ome.tif
470.3 MB
MMStack_Pos8.ome.tif
470.3 MB
MMStack_Pos9.ome.tif
470.3 MB
HybCycle_13
MMStack_Pos10.ome.tif
470.3 MB
MMStack_Pos12.ome.tif
470.3 MB
MMStack_Pos13.ome.tif
470.3 MB
MMStack_Pos14.ome.tif
470.3 MB
MMStack_Pos8.ome.tif
470.3 MB
MMStack_Pos9.ome.tif
470.3 MB
HybCycle_14
MMStack_Pos10.ome.tif
470.3 MB
MMStack_Pos12.ome.tif
470.3 MB
MMStack_Pos13.ome.tif
470.3 MB
MMStack_Pos14.ome.tif
470.3 MB
MMStack_Pos8.ome.tif
470.3 MB
MMStack_Pos9.ome.tif
470.3 MB
HybCycle_2
MMStack_Pos10.ome.tif
470.3 MB
MMStack_Pos12.ome.tif
470.3 MB
MMStack_Pos13.ome.tif
470.3 MB
MMStack_Pos14.ome.tif
470.3 MB
MMStack_Pos8.ome.tif
470.3 MB
MMStack_Pos9.ome.tif
470.3 MB
HybCycle_3
MMStack_Pos10.ome.tif
470.3 MB
MMStack_Pos12.ome.tif
470.3 MB
MMStack_Pos13.ome.tif
470.3 MB
MMStack_Pos14.ome.tif
470.3 MB
MMStack_Pos8.ome.tif
470.3 MB
MMStack_Pos9.ome.tif
470.3 MB
HybCycle_4
MMStack_Pos10.ome.tif
470.3 MB
MMStack_Pos12.ome.tif
470.3 MB
MMStack_Pos13.ome.tif
470.3 MB
MMStack_Pos14.ome.tif
470.3 MB
MMStack_Pos8.ome.tif
470.3 MB
MMStack_Pos9.ome.tif
470.3 MB
HybCycle_5
MMStack_Pos10.ome.tif
470.3 MB
MMStack_Pos12.ome.tif
470.3 MB
MMStack_Pos13.ome.tif
470.3 MB
MMStack_Pos14.ome.tif
470.3 MB
MMStack_Pos8.ome.tif
470.3 MB
MMStack_Pos9.ome.tif
470.3 MB
HybCycle_6
MMStack_Pos10.ome.tif
470.3 MB
MMStack_Pos12.ome.tif
470.3 MB
MMStack_Pos13.ome.tif
470.3 MB
MMStack_Pos14.ome.tif
470.3 MB
MMStack_Pos8.ome.tif
470.3 MB
MMStack_Pos9.ome.tif
470.3 MB
HybCycle_7
MMStack_Pos10.ome.tif
470.3 MB
MMStack_Pos12.ome.tif
470.3 MB
MMStack_Pos13.ome.tif
470.3 MB
MMStack_Pos14.ome.tif
470.3 MB
MMStack_Pos8.ome.tif
470.3 MB
MMStack_Pos9.ome.tif
470.3 MB
HybCycle_8
MMStack_Pos10.ome.tif
470.3 MB
MMStack_Pos12.ome.tif
470.3 MB
MMStack_Pos13.ome.tif
470.3 MB
MMStack_Pos14.ome.tif
470.3 MB
MMStack_Pos8.ome.tif
470.3 MB
MMStack_Pos9.ome.tif
470.3 MB
HybCycle_9
MMStack_Pos10.ome.tif
470.3 MB
MMStack_Pos12.ome.tif
470.3 MB
MMStack_Pos13.ome.tif
470.3 MB
MMStack_Pos14.ome.tif
470.3 MB
MMStack_Pos8.ome.tif
470.3 MB
MMStack_Pos9.ome.tif
470.3 MB
ImageJ restack script 14 slices.ijm
1.3 kB
readme_FigS14FISH.pdf
37.9 kB