ModelFigs.zip
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ModelFigs
.DS_Store
34.8 kB
IntrinsicNoise_FigS23
.DS_Store
8.2 kB
MF2AbsoluteBasinSizevsRobustness.pdf
1.2 MB
MF2RelativeBasinSizevsRobustness.pdf
763.4 kB
MF2andMF3AbsoluteBasinSizevsRobustness.pdf
1.2 MB
MF2andMF3RelativeBasinSizevsRobustness.pdf
777.5 kB
MF3AbsoluteBasinSizevsRobustness.pdf
1.2 MB
MF3RelativeBasinSizevsRobustness.pdf
770.0 kB
MultiFate2
alpha0.3to1.5beta6to30screening.npy
20.7 kB
MultiFate3
alpha0.3to1.5beta7to30screening.npy
48.5 kB
TypeIQuadraBasinvsRobustness.pdf
428.9 kB
TypeIQuadraBonly5traces.pdf
521.5 kB
TypeIQuadraOFF5traces.pdf
518.8 kB
allTypeIQuadra
cell0
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cell1
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cell10
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cell100
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cell101
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cell102
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cell20
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cell24
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cell99
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MF2BifurcationMovie_Fig4AandMovieS3
.DS_Store
14.3 kB
0HighTMP.pdf
465.6 kB
151LowTMP.pdf
493.5 kB
201HighTMP.pdf
465.6 kB
Asymmetric.tif
489.1 MB
AsymmetricTitle
Legends
Legends.ai
404.0 kB
Legends.png
82.2 kB
MF2BifurcationMovie.avi
55.0 MB
MF2BifurcationMovie.tif
1.3 GB
MF2BifurcationMovieSymmetricOnly.avi
30.8 MB
MF2BifurcationMovieSymmetricOnly.tif
802.6 MB
MF2BifurcationMovieSymmetricOnlyNoLegends.tif
489.1 MB
Symmetric.tif
489.1 MB
SymmetricTitle
WithCellsAsymmetricPhasedChange
WithCellsSymmetricPhasedChange
test.pdf
467.0 kB
MF2ParameterScreen_FigS1B
.DS_Store
6.1 kB
MF2_0.8_20_1_1.5_Kd_n_logspace_linspace.csv
43.7 kB
MF2_0.8_20_1_1.5_Kd_n_logspace_linspace.pdf
758.1 kB
MF2_0.8_20_1_1.5_alpha_Kd_logspace_logspace.csv
43.8 kB
MF2_0.8_20_1_1.5_alpha_Kd_logspace_logspace.pdf
758.5 kB
MF2_0.8_20_1_1.5_alpha_beta_logspace_logspace.csv
43.7 kB
MF2_0.8_20_1_1.5_alpha_beta_logspace_logspace.pdf
757.0 kB
MF2_0.8_20_1_1.5_alpha_n_logspace_linspace.csv
43.7 kB
MF2_0.8_20_1_1.5_alpha_n_logspace_linspace.pdf
757.7 kB
MF2_0.8_20_1_1.5_beta_Kd_logspace_logspace.csv
43.7 kB
MF2_0.8_20_1_1.5_beta_Kd_logspace_logspace.pdf
758.8 kB
MF2_0.8_20_1_1.5_beta_n_logspace_linspace.csv
43.6 kB
MF2_0.8_20_1_1.5_beta_n_logspace_linspace.pdf
757.1 kB
MF2_0.8_20_1_1.5_expfactor_Kd_logspace_logspace.csv
43.8 kB
MF2_0.8_20_1_1.5_expfactor_Kd_logspace_logspace.pdf
759.4 kB
MF2_0.8_20_1_1.5_expfactor_n_logspace_linspace.csv
43.7 kB
MF2_0.8_20_1_1.5_expfactor_n_logspace_linspace.pdf
758.2 kB
MF2PhasePortrait_Fig1CandFigS1A
.DS_Store
6.1 kB
Bi[0.4, 10, 1, 1.5, 1, 1, 1, 1]nolegend.pdf
798.3 kB
Monohigh[4, 100, 1, 1.5, 1, 1, 1, 1]nolegend.pdf
781.3 kB
Monolow[0.1, 5, 1, 1.5, 1, 1, 1, 1]nolegend.pdf
782.5 kB
Qua[0.1, 12, 1, 1.5, 1, 1, 1, 1]nolegend.pdf
818.5 kB
TypeIItri[0.2, 15, 1, 1, 1, 1, 1, 1]nolegend.pdf
792.7 kB
TypeIItri[0.8, 20, 1, 1.5, 1, 1, 1, 1]nolegend.pdf
790.4 kB
TypeItri[0.1, 8, 1, 1.5, 1, 1, 1, 1]nolegend.pdf
822.2 kB
legendwithbasin.pdf
811.7 kB
legendwithoutbasin.pdf
795.0 kB
MF2Switchability_FigS3andMovieS1
.DS_Store
22.5 kB
0.pdf
499.7 kB
162.pdf
499.7 kB
23.pdf
456.0 kB
48.pdf
456.0 kB
85.pdf
456.0 kB
Bistability regime.tif
785.2 MB
HighTMPABtoA
HighTMPABtoA.avi
12.7 MB
HighTMPABtoA.tif
318.2 MB
HighTMPABtoB
HighTMPABtoB.tif
318.2 MB
HighTMPAtoAB
HighTMPAtoAB.tif
318.2 MB
HighTMPBtoAB
HighTMPBtoAB.avi
12.8 MB
HighTMPBtoAB.tif
318.2 MB
Legends
Legends copy.png
227.1 kB
Legends.ai
546.6 kB
Legends.png
202.2 kB
LowTMP
LowTMPAtoB
LowTMPAtoB.avi
12.4 MB
LowTMPAtoB.tif
318.2 MB
LowTMPBtoA
LowTMPBtoA.tif
318.2 MB
MF2Switchability.avi
81.2 MB
MF2Switchability.tif
2.3 GB
Stripe1.tif
636.4 MB
Stripe2.tif
636.4 MB
Stripe3.tif
636.4 MB
Titles
Titles.ai
1.2 MB
Titles.png
31.1 kB
TyepII tristability regime.tif
1.5 GB
MF2and3Asymmetric_FigS15
.DS_Store
14.3 kB
Day0andDay18FlowDataforasymmetricModeling_updated.xlsx
75.9 kB
InsilicoDataSquare
MF2AWSparamscreen.csv
3.0 MB
MF2rmkg16x4_filtered.npy
932.0 kB
MF3AWSparamscreen.csv
40.1 MB
MF3rmkg3x4x16x4_filtered.npy
8.1 MB
PhasePortrait
forAWS
fromAWS
MF3Bifurcation_FigS21andMovieS6
.DS_Store
22.5 kB
ABChightointertohigh_t352withtitle.png
156.9 kB
ABChightolowtohigh_t302_withtitle.png
143.9 kB
ABChightolowtohigh_t50withtitle.png
155.9 kB
ABChightolowtohigh_t674withtitle.png
113.8 kB
ABChightolowtohigh_t724withtitle.png
154.7 kB
ABChightolowtohigh_t777withtitle.png
154.7 kB
ABhightolowtohigh
ABhightolowtohigh_t450withtitle.png
113.4 kB
ABhightolowtohigh_t500withtitle.png
154.6 kB
ABhightolowtohigh_t50withtitle.png
155.8 kB
AChightolowtohigh
AChightolowtohigh_t450withtitle.png
112.6 kB
AChightolowtohigh_t500withtitle.png
154.3 kB
AChightolowtohigh_t50withtitle.png
154.6 kB
BChightolowtohigh
BChightolowtohigh_t450withtitle.png
113.1 kB
BChightolowtohigh_t500withtitle.png
154.4 kB
BChightolowtohigh_t50withtitle.png
155.0 kB
HIghtoLowtoHighLegends
Legends.ai
395.3 kB
Legends.png
48.7 kB
MF3BIfurcationFramesfromABCstate
MF3BIfurcationFramesfromABCstateJPG
MF3BifurcationFramesforSlides
MovieS6_MF3Bifurcation.avi
34.3 MB
MovieS6_MF3Bifurcation.mp4
26.9 MB
MovieS6_MF3Bifurcation.tif
1.2 GB
hightointertohigh
hightolow_6states
hightolowtohigh
MF3ParameterScreen_FigS2B
.DS_Store
6.1 kB
MF3_0.8_20_1_1.5_Kd_n_logspace_linspace.csv
43.7 kB
MF3_0.8_20_1_1.5_Kd_n_logspace_linspace.pdf
758.3 kB
MF3_0.8_20_1_1.5_alpha_Kd_logspace_logspace.csv
43.8 kB
MF3_0.8_20_1_1.5_alpha_Kd_logspace_logspace.pdf
759.0 kB
MF3_0.8_20_1_1.5_alpha_beta_logspace_logspace.csv
43.7 kB
MF3_0.8_20_1_1.5_alpha_beta_logspace_logspace.pdf
757.5 kB
MF3_0.8_20_1_1.5_alpha_n_logspace_linspace.csv
43.7 kB
MF3_0.8_20_1_1.5_alpha_n_logspace_linspace.pdf
757.7 kB
MF3_0.8_20_1_1.5_beta_Kd_logspace_logspace.csv
43.7 kB
MF3_0.8_20_1_1.5_beta_Kd_logspace_logspace.pdf
759.2 kB
MF3_0.8_20_1_1.5_beta_n_logspace_linspace.csv
43.6 kB
MF3_0.8_20_1_1.5_beta_n_logspace_linspace.pdf
757.5 kB
MF3_0.8_20_1_1.5_expfactor_Kd_logspace_logspace.csv
43.8 kB
MF3_0.8_20_1_1.5_expfactor_Kd_logspace_logspace.pdf
759.6 kB
MF3_0.8_20_1_1.5_expfactor_n_logspace_linspace.csv
43.7 kB
MF3_0.8_20_1_1.5_expfactor_n_logspace_linspace.pdf
758.5 kB
MF3PhasePortrait_Fig1DandFigS2AandFigS21
.DS_Store
38.9 kB
Combined Stacks1.tif
532.0 MB
Combined Stacks2.tif
532.0 MB
Combined Stacks3.tif
532.0 MB
Legends
Legends.ai
333.7 kB
Legends.png
55.1 kB
MF3PhasePortraitwithLegends
MovieS4_MF3PhasePortraitAll.avi
57.3 MB
MovieS4_MF3PhasePortraitAll.mp4
23.2 MB
MovieS4_MF3PhasePortraitAll.tif
2.2 GB
emptystripe
emptystripe.tif
50.7 MB
hexa35paramtitle.png
143.5 kB
hexa_13.75alpha0.55beta13.75Kd1n1.5.npy
32.0 MB
hexaalpha0.54beta13.5Kd1n1.5
hexaalpha0.54beta13.5Kd1n1.5.npy
32.0 MB
hexaalpha0.5beta12.5Kd1n1.5
hexaalpha0.5beta12.5Kd1n1.5.npy
32.0 MB
hexaalpha1.2beta12Kd1n1.5.npy
256.0 MB
monohigh35paramtitle.png
91.0 kB
monohighalpha4beta100Kd1n1.5
monohighalpha4beta100Kd1n1.5.npy
32.0 MB
monohighalpha4beta40Kd1n1.5.npy
32.0 MB
monolow35paramtitle.png
65.5 kB
monolowalpha0.2beta5Kd1n1.5
monolowalpha0.2beta5Kd1n1.5.npy
32.0 MB
monolowalpha0.5beta5Kd1n1.5.npy
32.0 MB
octo35paramtitle.png
157.2 kB
octoalpha0.1beta20Kd10n1.5.npy
32.0 MB
octoalpha0.1beta20Kd1n1.5
octoalpha0.1beta20Kd1n1.5.npy
32.0 MB
tri35paramtitle.png
108.4 kB
trialpha0.8beta8Kd1n1.5.npy
32.0 MB
trialpha1beta8Kd1n1.5
trialpha1beta8Kd1n1.5.npy
32.0 MB
typeIIquadra35paramtitle.png
165.9 kB
typeIIquadraalpha2.4beta60Kd1n1.5
typeIIquadraalpha2.4beta60Kd1n1.5.npy
32.0 MB
typeIIquadraalpha2.5beta25Kd1n1.5.npy
32.0 MB
typeIIsepta35paramtitle.png
151.1 kB
typeIIsepta35paramtitlenarrow.png
79.7 kB
typeIIsepta35paramtitlenolabel.png
67.4 kB
typeIIsepta_15alpha0.6beta15Kd1n1.5.npy
32.0 MB
typeIIsepta_16.25alpha0.65beta16.25Kd1n1.5.npy
32.0 MB
typeIIsepta_17.5alpha0.7beta17.5Kd1n1.5.npy
32.0 MB
typeIIsepta_18.75alpha0.75beta18.75Kd1n1.5.npy
32.0 MB
typeIIseptaalpha0.8beta20Kd1n1.5
typeIIseptaalpha0.8beta20Kd1n1.5.avi
5.7 MB
typeIIseptaalpha0.8beta20Kd1n1.5.npy
32.0 MB
typeIIseptaalpha1.5beta15Kd1n1.5.npy
32.0 MB
typeIIseptaalpha1.6beta16Kd1n1.5.npy
32.0 MB
typeIquadra35paramtitle.png
116.2 kB
typeIquadra_10.5alpha0.42beta10.5Kd1n1.5.npy
32.0 MB
typeIquadraalpha0.1beta8Kd1n1.5.npy
32.0 MB
typeIquadraalpha0.4beta10Kd1n1.5
typeIquadraalpha0.4beta10Kd1n1.5.npy
32.0 MB
typeIsepta35paramtitle.png
139.7 kB
typeIsepta_11.25alpha0.45beta11.25Kd1n1.5.npy
32.0 MB
typeIsepta_11.5alpha0.46beta11.5Kd1n1.5.npy
32.0 MB
typeIsepta_11alpha0.44beta11Kd1n1.5.npy
32.0 MB
typeIsepta_12alpha0.48beta12Kd1n1.5.npy
32.0 MB
typeIseptaalpha0.1beta12.5Kd1n1.5
typeIseptaalpha0.1beta12.5Kd1n1.5.npy
32.0 MB
typeIseptaalpha0.1beta24Kd10n1.5.npy
32.0 MB
MFNExpandability_Fig5DandFigS22
.DS_Store
18.4 kB
alpha0.4beta10Kd1n1.5
alpha0.4beta10Kd1n1.5NumofTFONvsRobustness.pdf
432.5 kB
alpha0.4beta10Kd1n1.5RobustvsTotalFixedPts.pdf
1.1 MB
alpha0.4beta10Kd1n1.5RobustvsTotalFixedPtsNoTitle.pdf
1.1 MB
alpha0.8beta20Kd1n1.5
alpha0.8beta20Kd1n1.5NumofTFONvsRobustness.pdf
448.6 kB
alpha0.8beta20Kd1n1.5RobustvsTotalFixedPts.pdf
1.1 MB
alpha0.8beta20Kd1n1.5RobustvsTotalFixedPtsNoTitle.pdf
1.1 MB
alpha1.2beta30Kd1n1.5
alpha1.2beta30Kd1n1.5NumofTFONvsRobustness.pdf
470.7 kB
alpha1.2beta30Kd1n1.5RobustvsTotalFixedPts.pdf
1.1 MB
alpha1.2beta30Kd1n1.5RobustvsTotalFixedPtsNoTitle.pdf
1.1 MB
forAWS
fromAWS
Movie S1_Modeling of MultiFate-2 state-switching dynamics.mp4
7.1 MB
Movie S3_Modeling of MultiFate-2 bifurcation dynamics and irreversible transitions.mp4
7.0 MB
Movie S4_MultiFate-3 Phase Diagrams.mp4
23.2 MB
Movie S6_Modeling of MultiFate-3 bifurcation dynamics and irreversible transitions.mp4
24.0 MB
TFvsFP_FigS6
.DS_Store
10.2 kB
1DFPlinear.pdf
440.6 kB
1DFPlinearbeta7.pdf
433.1 kB
1DFPlineardeg2.pdf
440.6 kB
1DFPlog.pdf
821.1 kB
1DFPlogbeta7.pdf
813.7 kB
1DFPlogdeg2.pdf
821.1 kB
1DTFlinear.pdf
820.4 kB
1DTFlinearTFbeta7.pdf
813.4 kB
AtoBDynamics
tmat0.5tdeg10.125.npy
3.5 MB
tmat0.5tdeg4.5new.npy
880.1 kB
tmat1tdeg6.75.npy
3.5 MB
tmat2tdeg2.npy
3.5 MB
tmat8tdeg2.npy
3.5 MB
tmat8tdeg3.npy
3.5 MB
tmat8tdeg6.75.npy
3.5 MB
BistabilityTF.pdf
484.3 kB
BistableAtoBt0Fluo.pdf
427.2 kB
BistableAtoBt0TF.pdf
487.5 kB
BistableAtoBt1Fluo.pdf
427.2 kB
BistableAtoBt1TF.pdf
455.1 kB
BistableAtoBt2Fluo.pdf
427.2 kB
BistableAtoBt2TF.pdf
455.1 kB
BistableAtoBt3Fluo.pdf
427.2 kB
BistableAtoBt3TF.pdf
487.5 kB
BistableFluo.pdf
428.1 kB
Delay.pdf
427.8 kB
MultiFate2
MultiFate2FluoOverlap.pdf
429.2 kB
MultiFate2FluoOverlapLog.pdf
430.0 kB
MultiFate2TFOverlap.pdf
429.1 kB
MultiFate2TypeIItristablevsBistableLegends.pdf
429.9 kB
TFvsFP1D.pdf
866.1 kB
TypeIItristableFluo.pdf
428.4 kB
TypeIItristableTF.pdf
468.9 kB
beta=10_tdeg2.csv
21.4 kB
beta=10_tdeg65.csv
21.7 kB
beta=20_tdeg2.csv
24.4 kB
beta=20_tdeg65.csv
24.8 kB
beta=30_tdeg2.csv
24.3 kB
beta=30_tdeg65.csv
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178 Bytes
._MultiFate2TFOverlap.pdf
178 Bytes
._MultiFate2TypeIItristablevsBistableLegends.pdf
291 Bytes
._TFvsFP1D.pdf
178 Bytes
._TypeIItristableFluo.pdf
178 Bytes
._TypeIItristableTF.pdf
291 Bytes
._beta=10_tdeg2.csv
178 Bytes
._beta=10_tdeg65.csv
177 Bytes
._beta=20_tdeg2.csv
178 Bytes
._beta=20_tdeg65.csv
178 Bytes
._beta=30_tdeg2.csv
177 Bytes
._beta=30_tdeg65.csv
178 Bytes
._beta=3_tdeg2.csv
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._beta=3_tdeg65.csv
178 Bytes
._beta=7_tdeg2.csv
178 Bytes
._beta=7_tdeg65.csv
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._colormap.pdf
291 Bytes
._firsttest
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._sigmoidal.pdf
291 Bytes
AtoBDynamics
._tmat0.5tdeg10.125.npy
178 Bytes
._tmat0.5tdeg4.5new.npy
178 Bytes
._tmat1tdeg6.75.npy
177 Bytes
._tmat2tdeg2.npy
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._tmat8tdeg2.npy
177 Bytes
._tmat8tdeg3.npy
178 Bytes