Efficient and accurate detection of viral sequences at single-cell resolution reveals novel viruses perturbing host gene expression

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Single-cell RNA sequencing count matrices and other data generated in the manuscript "Efficient and accurate detection of viral sequences at single-cell resolution reveals novel viruses perturbing host gene expression". The code used to generate these files can be found here: https://github.com/pachterlab/LSCHWCP_2023

If you use this data, please cite the manuscript: 

Laura Luebbert, Delaney K Sullivan, Maria Carilli, Kristjan Eldjarn Hjorleifsson, Alexander Viloria Winnett, Tara Chari, Lior Pachter (2023). Efficient and accurate detection of viral sequences at single-cell resolution reveals novel viruses perturbing host gene expression. bioRxiv 2023.12.11.571168; doi: https://doi.org/10.1101/2023.12.11.571168

View the manuscript here: https://www.biorxiv.org/content/10.1101/2023.12.11.571168

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