Published January 22, 2020 | Version 1.0
Dataset Open

CITE-seq protein and mRNA counts

Gorin, Gennady1 ORCID icon
Svensson, Valentine1 ORCID icon
Pachter, Lior1 ORCID icon
  • 1. ROR icon California Institute of Technology

Description

Protein counts were acquired from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE100866. LOOM was generated from FASTQ. cellranger processing: cellranger count --id=(desired bam directory) --transcriptome=(transcriptome directory) --fastqs=(fastq directory) --localcores=40 --localmem=100 --chemistry=SC3Pv2 velocyto processing: velocyto run10x --samtools-threads 60 --samtools-memory 5000 (desired bam directory) (transcriptome directory)/genes/genes.gtf

Files

GSE100866_PBMC_vs_flow_10X-ADT_umi.csv
Files (27.8 MB)
Name Size
GSE100866_PBMC_vs_flow_10X-ADT_umi.csv
md5:e8c2f91b45c69eeebc86e1f7dec9dc33
377.6 kB Preview Download
SPBMC_run3.loom
md5:23eb5e758ddb415a3d338ba830420ba6
27.4 MB Download

Additional details

Identifiers
Created:
September 8, 2022
Modified:
November 18, 2022