Cportucalensis_genetic_mech_pre-print.zip
ltsypin-Cportucalensis_genetic_mech-ca5e9cd
README.md
727 Bytes
cport_conda_env_spec_file.txt
25.5 kB
data
ATP
2019_08_28_EChemSurvival_ATP.csv
7.0 kB
2019_08_28_EChemSurvival_ATP.xls
27.6 kB
2019_10_07_EChemSurvival_ATP_requant.csv
6.9 kB
2019_10_07_EChemSurvival_ATP_requant.xls
27.6 kB
2019_10_20_EChemSurvival_ATP_requant.csv
7.8 kB
2019_11_11_EChemSurvival_ATP.csv
6.8 kB
2019_12_02_EChemSurvival_ATP.csv
6.8 kB
CFUs
2019_08_28_electrolysis_survival_CFUcounts.csv
2.9 kB
2019_10_07_electrolysis_survival_CFUcounts.csv
3.3 kB
2019_10_20_electrolysis_survival_CFUcounts.csv
3.3 kB
2019_11_04_electrolysis_survival_spiking_CFUcounts.csv
766 Bytes
2019_11_11_electrolysis_survival_CFUcounts.csv
3.2 kB
2019_12_02_electrolysis_survival_CFUcounts.csv
3.3 kB
EChem
2019_08_28_electrolysis_survival_p0.txt
4.8 MB
2019_08_28_electrolysis_survival_p1.txt
4.8 MB
2019_08_28_electrolysis_survival_p2.txt
4.8 MB
2019_08_28_electrolysis_survival_p3.txt
4.8 MB
2019_10_06_electrolysis_survival_p0.txt
3.9 MB
2019_10_06_electrolysis_survival_p1.txt
3.9 MB
2019_10_06_electrolysis_survival_p2.txt
3.9 MB
2019_10_06_electrolysis_survival_p3.txt
3.9 MB
2019_10_19_electrolysis_survival_p0.txt
4.0 MB
2019_10_19_electrolysis_survival_p1.txt
4.0 MB
2019_10_19_electrolysis_survival_p2.txt
4.0 MB
2019_10_19_electrolysis_survival_p3.txt
4.0 MB
2019_11_03_EChemSurvival_Spiking_p0.txt
3.9 MB
2019_11_03_EChemSurvival_Spiking_p1.txt
3.9 MB
2019_11_03_EChemSurvival_Spiking_p2.txt
3.9 MB
2019_11_03_EChemSurvival_Spiking_p3.txt
3.9 MB
2019_11_10_EChemSurvival_p0.txt
3.9 MB
2019_11_10_EChemSurvival_p1.txt
3.9 MB
2019_11_10_EChemSurvival_p2.txt
3.9 MB
2019_11_10_EChemSurvival_p3.txt
3.9 MB
2019_11_10_electrolysis_survival_p0.txt
3.9 MB
2019_11_10_electrolysis_survival_p1.txt
3.9 MB
2019_11_10_electrolysis_survival_p2.txt
3.9 MB
2019_11_10_electrolysis_survival_p3.txt
3.9 MB
2019_12_01_EChemSurvival_p0.txt
4.8 MB
2019_12_01_EChemSurvival_p1.txt
4.8 MB
2019_12_01_EChemSurvival_p2.txt
4.8 MB
2019_12_01_EChemSurvival_p3.txt
4.8 MB
2019_12_01_electrolysis_survival_p0.txt
4.8 MB
2019_12_01_electrolysis_survival_p1.txt
4.8 MB
2019_12_01_electrolysis_survival_p2.txt
4.8 MB
2019_12_01_electrolysis_survival_p3.txt
4.8 MB
Nitrite
2019_08_28_EChemSurvivalNO2only.csv
2.7 kB
2019_10_07_EChemSurvival_NO2only.csv
2.7 kB
2019_10_20_EChemSurvival_NO2only.csv
2.7 kB
2019_11_11_EChemSurvival_NO2only.csv
2.7 kB
2019_12_02_EChemSurvival_NO2only.csv
2.7 kB
plates
2021_10_19_compare_single_tlKOs_fluor.xls
195.6 kB
2021_10_19_compare_single_tlKOs_plate_map.xlsx
11.0 kB
2021_12_03_all_nitrate_reductase_tlKOs_fluor.xls
281.6 kB
2021_12_03_all_nitrate_reductase_tlKOs_map.xlsx
11.0 kB
2021_12_27_pregrowth_comp_fluor.xls
207.4 kB
2021_12_27_pregrowth_comp_map.xlsx
11.0 kB
2021_12_28_TEAs_and_pregrowth_and_PA14muts_fluor.xls
207.4 kB
2021_12_28_TEAs_and_pregrowth_and_PA14muts_map.xlsx
11.2 kB
2022_01_07_FumarateMuts_PCAcomp_fluor.xls
280.1 kB
2022_01_07_FumarateMuts_PCAcomp_map.xlsx
11.0 kB
2022_05_14_NitrateReductase_tlKOs_quinone_tlKOs_fluor.xls
372.2 kB
2022_05_14_NitrateReductase_tlKOs_quinone_tlKOs_map.xlsx
11.0 kB
2022_05_18_frdA_menA_menAubiC_tlKOs_fumarate_nitrate_4HB_fluor.xls
210.9 kB
2022_05_18_frdA_menA_menAubiC_tlKOs_fumarate_nitrate_4HB_map.xlsx
10.9 kB
2022_06_06_alternativeTEAs_tlKOs_quinone_tlKOs_fluor.xls
383.0 kB
2022_06_06_alternativeTEAs_tlKOs_quinone_tlKOs_map.xlsx
11.0 kB
2022_06_28_RedoTMAO_DMSO_NO3_fluor.xls
384.5 kB
2022_06_28_RedoTMAO_DMSO_NO3_map.xlsx
11.0 kB
2022_07_13_NitrateReductase_tlKOs_Quinone_tlKOs_QuinoneNitrateReductaseSingle_tlKOs_standing_pregrowth_fluor.xls
391.7 kB
2022_07_13_NitrateReductase_tlKOs_Quinone_tlKOs_QuinoneNitrateReductaseSingle_tlKOs_standing_pregrowth_map.xlsx
11.1 kB
2022_08_19_PCAoxidation_byUb1_forLev.xml
32.9 kB
2022_09_23_test_TMAOs_fluor.xls
43.5 kB
2022_09_23_test_TMAOs_map.xlsx
10.8 kB
2022_09_27_pregrowth_comparison_fluor.xls
279.6 kB
2022_09_27_pregrowth_comparison_map.xlsx
11.0 kB
2022_09_29_pregrowth_comparison_fluor.xls
210.4 kB
2022_09_29_pregrowth_comparison_map.xlsx
11.0 kB
2022_10_05_pregrowth_comparison_fluor.xls
210.4 kB
2022_10_05_pregrowth_comparison_map.xlsx
11.0 kB
2022_10_06_quinone_KO_panel_fluor.xls
210.4 kB
2022_10_06_quinone_KO_panel_map.xlsx
10.9 kB
2022_10_07_dmsA_torA_dmsAtorA_DMSO_TMAO_fluor.xls
391.7 kB
2022_10_07_dmsA_torA_dmsAtorA_DMSO_TMAO_map.xlsx
10.9 kB
2022_10_11_PCAsubstitutionForQuinolExp_fluor.xls
391.7 kB
2022_10_11_PCAsubstitutionForQuinolExp_map.xlsx
11.1 kB
2022_11_22_Complementations_noNarG_OD600.xls
802.8 kB
2022_11_22_Complementations_noNarG_fluor.xls
342.0 kB
2022_11_22_Complementations_noNarG_map.xlsx
11.1 kB
2022_12_07_Complementations_including_NarG_fluor.xls
391.7 kB
2022_12_07_Complementations_including_NarG_map.xlsx
11.2 kB
data_reformatting.ipynb
96.0 kB
genetic_mechanism_PCA_oxidation_analysis.ipynb
4.5 MB
genetic_mechanism_PCA_oxidation_analysis_EChem.ipynb
565.2 kB