Published 2017 | Version v1
Dataset Open

Coxiella_ Verocells_28dpi

  • 1. ROR icon California Institute of Technology

Description

Coxiella burnetii Nine Mile phase II clone 4 (NMIIC4) strain. Coxiella cells purified from infected Vero cells.

Technical info

Tilt Series Date: 2017-09-25

Data Taken By: Debnath Ghosal

Species / Specimen: Coxiella burnetii

Strain: Nine Mile phase II clone 4

Tilt Series Settings: Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Ų, defocus: -7.0 μm, magnification: 27500x.

Microscope: Caltech Polara

Acquisition Software: UCSFTomo

Upload Method: pipeline

Processing Software Used: Raptor

Collaborators and Roles: Strain sent to us by Robert Heinzen. Data collected and processed by Debnath Ghosal using Caltech tomography pipeline.

Purification / Growth Conditions / Treatment: Refer to Heinzen lab.

Sample Preparation: Freezing: 100% humidity, 4µl sample, Blot force 6, blot time 4 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.T

dga2017-09-25-91_slicer18899.jpg: multi-layered structure beneath the inner membrane dga2017-09-25-91_slicer18900.jpg: more multi-layered structure beneath the inner membrane dga2017-09-25-91_slicer18901.jpg: more multi-layered structure beneath the inner membrane dga2017-09-25-91_slicer19023.jpg: multilayer structure under the inner membrane

Attached Files

Cb_vero_201709250091.mrc, Tilt Series (Pixel Size 0.39 nm), 1.7 GB

Cb_vero_201709250091_part61_4.rec, Reconstruction (Pixel Size 1.56 nm), 445.4 MB

Files

dga2017-09-25-91_slicer18899.jpg

Files (2.2 GB)

Name Size
1.7 GB (external) Download
445.4 MB (external) Download
md5:84b9393c13315ce8f8a82ff4e673bdf9
226.5 kB Preview Download
md5:d5a4327e81ad677616c381809f1b8c93
203.5 kB Preview Download
md5:51634d8e104e90f38a742be18f3b03d1
173.7 kB Preview Download
md5:a6fc737a5feaf46e98fba7c64f7a4850
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md5:367da743b3bd89d94a15d0b2877aa603
1.1 MB Preview Download
md5:277000796c97d5cb0c2aeb521fa83e08
16.7 MB Preview Download

Additional details

Identifiers

DOI
10.22002/the4j-6w768
TILT_SERIES_ID
dga2017-09-25-91

Funding

NIH
HHMI
Beckman Institute
Gordon and Betty Moore Foundation
Agouron Institute
John Templeton Foundation

Dates

Collected
2017-09-25
Created
2017-09-27
Updated
2017-11-15