Published January 22, 2020 | Version 1.0
Dataset Open

REAP-seq protein and mRNA counts

Gorin, Gennady1 ORCID icon
Svensson, Valentine1 ORCID icon
Pachter, Lior1 ORCID icon
  • 1. ROR icon California Institute of Technology

Citation

Gorin, G., Svensson, V., & Pachter, L. (2020). REAP-seq protein and mRNA counts (1.0) [Data set]. CaltechDATA. https://doi.org/10.22002/D1.1341

Description

Protein count data were acquired from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM2685243, file GSM2685243_protein_2_PBMCs_matrix.txt.gz, and processed into csv format. Aligned bam file was acquired from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM2685238, file mRNA_2_PBMCs_possorted_genome_bam.bam. velocyto processing: velocyto run (bam directory)/mRNA_2_PBMCs_possorted_genome_bam.bam(transcriptome directory)/genes/genes.gtf

Files

GSM2685243_protein_2_PBMCs_matrix_processed.csv
Files (35.4 MB)
Name Size
GSM2685243_protein_2_PBMCs_matrix_processed.csv
md5:e6d42ded558dcdb2cd8a062d879fb5eb
347.2 kB Preview Download
mRNA_2_PBMCs_possorted_genome_bam_BJ2UE.loom
md5:ef8ad11af37da4f377e6142169a4facc
35.1 MB Download

Additional details

Identifiers
Created:
September 8, 2022
Modified:
November 18, 2022