This resource provides code and example data for performing Kin Correlation Analysis (KCA), which allows inference of cell state transition rates from lineage information and end-point cell state measurements. See related publication for full information. Movie_Tracking.zip contains code for cell tracking and lineage visualization. Data_Analy...

Cell-cell communication systems typically comprise families of ligand and receptor variants that function together in combinations. Pathway activation depends in a complex way on which ligands are present and what receptors are expressed by the signal-receiving cell. To understand the combinatorial logic of such a system, we systematically measu...

In multicellular organisms, secreted ligands selectively activate, or "address," specific target cell populations to control cell fate decision-making and other processes. Key cell-cell communication pathways use multiple promiscuously interacting ligands and receptors, provoking the question of how addressing specificity can emerge from molecul...

This dataset provides the raw and analyzed data as well as the code to recreate results reported in the paper "In situ readout of DNA barcodes and single base edits facilitated by in vitro transcription". The dataset is organized based on the figures and figure panels of the paper, with the codes provided as Matlab and R scripts. Please contact ...

Raw and processed data associated with the synpoptosis paper

Overview This repository contains code and data for analysis and plotting related to the development of synthetic RNA export systems and their application for non-destructive measurement of cell dynamics and delivering RNA from cell to cell. Citation If you use this code, please cite this paper. Horns et al., Engineering RNA export for measureme...