This deposit has analysis files, data, and intermediate files for testing a linearly decoded variational autoencoder used to explore massive scale scRNA-seq data.

This deposit contains a snapshot of data, and a Jupyter notebook that was used to generate figures from the data, which serves as an example for how the data can be investigated

Code for producing the analysis in the "Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq" by Valentine Svensson, Eduardo Beltrame and Lior Pachter