Raw flow cytometry data for all data collections in the paper "Mapping DNA sequence to transcription factor binding energy in vivo" in PLOS Computational Biology. Each data file is available in .fcs and .csv formats and are labeled by date taken followed by a descriptor which corresponds to a data point referenced in the paper. The raw dat...

Microscopy movies to study the dynamics of cortical CYK-1 foci in C. elegans during early actomyosin flow by imaging fluorescence recovery after photo-bleaching. One-cell C. elegans embryos were obtained from animals grown at room temperature, after 24 hours of feeding with E. coli carrying rga-3 RNAi or L4440 (control) constructs, using a Niko...

This repository contains the undergraduate thesis of Manuel Bedrossian as referenced in the PhD Thesis of Manuel Bedrossian. Please refer to the thesis text and appendices for more information on the code as well as instructions on its use.

Experimental data for active matter (microtubule and kinesin motor) contraction and fluid flow. Hollow square cases.

This repository contains a video recorded by a Dalsa Falcon VGA 300 camera recording at 250 FPS. Playback is at 10 FPS, a factor of 25 slow-down.

Data used in the Review of Scientific Instruments manuscript titled "Laser-Induced Fluorescence Measurement of Very Slow Neutral Flows in a Dusty Plasma Experiment" The three zip files each contain measured data used in different parts of the manuscript. LIFTemperatureData.zip: Contains 82 .csv files and 1 .txt file. The number .csv files fro...

These data correspond to the comma separated value files converted from the original flow cytometry standard (.fcs) files generated from the experimental measurement of fluorescence on a MiltenyiBiotec MACSQuant flow cytometer. These files were passed through a processing pipeline to quantify the fold-change in gene expression due to action by...

This data set contains raw flow cytometry files for the publication "The Energetics of Molecular Adaptation in Transcriptional Regulation". Please see the included README for details of the files and missing data sets.

This folder contains all data sets used in the analysis and figure generation presented in my PhD thesis. Please see the associated `README.md` file for more information.

This contains .csv files of flow cytometry data used for the generation of figures in the biorxiv 'Tunable integrase-mediated differentiation facilitates improved output of burdensome functions in E. coli'. Additionally this contains code used to analyze/generate figures from the data, and to model the circuit architectures proposed. All informa...