Code and data for Li & Meister (2023) Functional Cell Types in the Mouse Superior Colliculus. Copy of this Github release: https://github.com/yatangli/Li-CellTypes-2023/releases/tag/v1.0.

Optogenetics, calcium imaging, and modern microscopy provide a powerful approach to uncover new biological phenomena and explore cellular and molecular mechanisms in ways that are both visual and quantitative. Paired properly, optogenetic approaches combined with calcium imaging can determine functional relationships within biological circuits. ...

Calcium imaging is a widely used tool in neuroscience, and our community now has access to multiple computational tools to process and analyze these data. However, significant portion of work with imaging data relies on much simpler approaches than offered in these software packages. Correlation with stimuli or behavior, detection of periodic ac...

This dataset was collected to quantify inter-annotator variability in manual labeling of social behaviors in freely interacting mice. We provided a group of graduate students, postdocs, and technicians in the Anderson lab with written descriptions of close investigation, mounting, and attack behaviors (included below), and instructed them to sc...

This dataset contains trained neural network models for mouse detection and pose estimation, and trained classifiers for mouse behavior annotation. These model files accompany the MARS end-user software posted at https://github.com/neuroethology/MARS, for MARS version 1.8. To use these trained models, download the models.zip file and unzip into...

The Caltech Resident-Intruder Mouse dataset (CRIM13) consists of 237x2 videos (recorded with synchronized top and side view) of pairs of mice engaging in social behavior, catalogued into thirteen different actions. Each video lasts ~10min, for a total of 88 hours of video and 8 million frames. A team of behavior experts annotated each video on a...

This dataset accompanies "Decoding Motor Plans Using a Closed-Loop Ultrasonic Brain-Machine Interface". It includes the 2 Hz real-time data (.mat files), metadata about each session (`project_record.json`), and description of the contents of each .mat file (`DescriptionOfVariables.pdf`).Abstract of "Decoding Motor Plans Using a Closed-Loop Ultra...