Published December 4, 2020 | Version 1.0
Dataset Open

Ligand-receptor promiscuity enables cellular addressing

  • 1. ROR icon California Institute of Technology
  • 2. ROR icon University of Chicago
  • 3. ROR icon Weizmann Institute of Science

Description

In multicellular organisms, secreted ligands selectively activate, or "address," specific target cell populations to control cell fate decision-making and other processes. Key cell-cell communication pathways use multiple promiscuously interacting ligands and receptors, provoking the question of how addressing specificity can emerge from molecular promiscuity. To investigate this issue, we developed a general mathematical modeling framework based on the bone morphogenetic protein (BMP) pathway architecture. We find that promiscuously interacting ligand-receptor systems allow a small number of ligands, acting in combinations, to address a larger number of individual cell types, defined by their receptor expression profiles. Promiscuous systems outperform seemingly more specific one-to-one signaling architectures in addressing capability. Combinatorial addressing extends to groups of cell types, is robust to receptor expression noise, grows more powerful with increasing numbers of receptor variants, and is maximized by specific biochemical parameter relationships. Together, these results identify design principles governing cellular addressing by ligand combinations.

Other

This dataset contains the data, code, and scripts to reproduce the results in the manuscript, "Ligand-receptor promiscuity enables cellular addressing." Within this resource, data and scripts are organized by figure. All code is written in Python, with analysis scripts provided as Jupyter notebooks.

Files

CombinatorialAddressing.zip

Files (149.0 MB)

Name Size
md5:2cb95f4b164a5862f61836676ef1cb08
149.0 MB Preview Download

Additional details

Identifiers

CALTECHDATA_ID
1692

Related works

Is supplement to
10.7907/z7dv-m192 (DOI)