Published August 16, 2019 | Version 1.0

Dataset Open

Data and analysis files for linear scVI paper

Creators: Valentine Svensson¹

1. California Institute of Technology

Description

This deposit has analysis files, data, and intermediate files for testing a linearly decoded variational autoencoder used to explore massive scale scRNA-seq data.

Files

1. Linear scvi timing.ipynb

Files (3.3 GB)

Name	Size	Actions
1. Linear scvi timing.ipynb md5:f6991a292ddaf944c3e89d28d7032ff9	116.1 kB	Preview Download
2. Timing figures.ipynb md5:fc350ed1ee8cbfb89f1bf2e19e791604	159.3 kB	Preview Download
3. Linear scvi on Cao.ipynb md5:57b902a6f4a95a15c1033e0b8b31083b	737.0 kB	Preview Download
4. Regular scvi on Cao.ipynb md5:6d640b12d6d8a67c1eb972da7350cb15	11.3 kB	Preview Download
5. Cao result figures.ipynb md5:1faf75fb1bfb13d3671d4e5508d85f47	559.9 kB	Preview Download
6. Result tSNEs.ipynb md5:c55856925441fa50c2e8690f6e5a31cf	306.6 kB	Preview Download
cao_atlas.h5ad md5:64be880102ae07c76cc3b8e390f96866	3.0 GB	Download
cao_full_training_hist.csv md5:d145701880016354ca615441c26e03e3	375 Bytes	Preview Download
cao_linear_W.csv md5:804570fa37cd631e773b3e37b1faabbb	167.3 kB	Preview Download
cao_linear_Z.csv md5:3d1d45c2d29209ee96d90c63461cfc9f	276.4 MB	Preview Download
linear_inference_times.csv md5:b096d62934abdb80bce875c179d60c99	564 Bytes	Preview Download
linear_train_history.csv md5:78e11a36ee4d34cd74f70765e85dd529	2.3 kB	Preview Download

Additional details

DOI

Resource type: Dataset
Publisher: CaltechDATA
Languages: English

Created:: September 8, 2022
Modified:: November 28, 2022